- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 4 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)
DIO.2: 3 residues within 4Å:- Chain A: M.1, G.29
- Chain B: W.257
No protein-ligand interaction detected (PLIP)DIO.3: 2 residues within 4Å:- Chain A: E.56, E.90
No protein-ligand interaction detected (PLIP)DIO.9: 3 residues within 4Å:- Chain A: W.257
- Chain B: M.1, G.29
No protein-ligand interaction detected (PLIP)DIO.10: 2 residues within 4Å:- Chain B: E.56, E.90
No protein-ligand interaction detected (PLIP)- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 6 residues within 4Å:- Chain A: L.52, L.53, P.54, P.55, D.81, A.83
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.52
GOL.5: 3 residues within 4Å:- Chain A: V.47, V.50
- Ligands: GOL.7
No protein-ligand interaction detected (PLIP)GOL.6: 3 residues within 4Å:- Chain A: P.99, L.220, R.224
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.224
- Water bridges: A:L.226
GOL.7: 3 residues within 4Å:- Chain A: V.50, G.80
- Ligands: GOL.5
1 PLIP interactions:1 interactions with chain A- Water bridges: A:G.80
GOL.11: 6 residues within 4Å:- Chain B: L.52, L.53, P.54, P.55, D.81, A.83
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:L.52
GOL.12: 3 residues within 4Å:- Chain B: V.47, V.50
- Ligands: GOL.14
No protein-ligand interaction detected (PLIP)GOL.13: 3 residues within 4Å:- Chain B: P.99, L.220, R.224
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.224
- Water bridges: B:L.226
GOL.14: 3 residues within 4Å:- Chain B: V.50, G.80
- Ligands: GOL.12
1 PLIP interactions:1 interactions with chain B- Water bridges: B:G.80
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Bagautdinov, B. et al., Crystal Structure Analysis of Phosphomethylpyrimidine Kinase (ThiD) from Thermus Thermophilus Hb8. To be Published
- Release Date
- 2003-04-08
- Peptides
- Phosphomethylpyrimidine Kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 4 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Bagautdinov, B. et al., Crystal Structure Analysis of Phosphomethylpyrimidine Kinase (ThiD) from Thermus Thermophilus Hb8. To be Published
- Release Date
- 2003-04-08
- Peptides
- Phosphomethylpyrimidine Kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A