SMTL ID : 1ub3.1

Crystal Structure of Tetrameric Structure of Aldolase from thermus thermophilus HB8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-tetramer

Ligands

4 x HPD: 1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE(Covalent)

HPD.1: 15 residues within 4Å: Chain A: L.12, C.37, V.60, D.89, K.151, S.153, T.154, G.155, A.182, G.183, G.184, R.186, G.203, T.204, S.205 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:T.10, A:D.89, A:K.151, A:G.183, A:G.184, A:G.203, A:T.204, A:S.205, A:S.205 Water bridges: A:K.180, A:K.180, A:I.185, A:R.186, A:S.205, A:S.205, A:S.205, A:S.205 Salt bridges: A:R.186 HPD.2: 15 residues within 4Å: Chain B: L.12, C.37, V.60, D.89, K.151, S.153, T.154, G.155, A.182, G.183, G.184, R.186, G.203, T.204, S.205 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:T.10, B:G.183, B:G.184, B:G.203, B:T.204, B:S.205, B:S.205 Water bridges: B:K.180, B:K.180, B:I.185, B:R.186 Salt bridges: B:R.186 HPD.3: 15 residues within 4Å: Chain C: L.12, C.37, V.60, D.89, K.151, S.153, T.154, G.155, A.182, G.183, G.184, R.186, G.203, T.204, S.205 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:D.89, C:G.183, C:G.184, C:G.203, C:S.205, C:S.205 Water bridges: C:K.180, C:K.180, C:I.185, C:R.186, C:S.205, C:S.205, C:S.205, C:S.205 Salt bridges: C:R.186 HPD.4: 15 residues within 4Å: Chain D: L.12, C.37, V.60, D.89, K.151, S.153, T.154, G.155, A.182, G.183, G.184, R.186, G.203, T.204, S.205 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:G.183, D:G.184, D:G.203, D:S.205, D:S.205 Water bridges: D:K.180, D:K.180, D:I.185, D:R.186, D:S.205, D:S.205 Salt bridges: D:R.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lokanath, N.K. et al., Structure of aldolase from Thermus thermophilus HB8 showing the contribution of oligomeric state to thermostability. Acta Crystallogr.,Sect.D (2004)

Release Date

2003-04-08

Peptides

Aldolase protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Aldolase protein

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