SMTL ID : 1ubw.1

STRUCTURE OF FARNESYL PYROPHOSPHATE SYNTHETASE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.117, D.121 Ligands: MG.2, GPP.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.117, A:D.121, H2O.42 MG.2: 6 residues within 4Å: Chain A: D.117, D.121, Q.185, D.188 Ligands: MG.1, GPP.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.117, A:D.121, H2O.65 MG.4: 4 residues within 4Å: Chain B: D.117, D.121 Ligands: MG.5, GPP.6 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.117, B:D.121, H2O.123 MG.5: 6 residues within 4Å: Chain B: D.117, D.121, Q.185, D.188 Ligands: MG.4, GPP.6 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.117, B:D.121, H2O.146

2 x GPP: GERANYL DIPHOSPHATE(Non-covalent)

GPP.3: 15 residues within 4Å: Chain A: S.113, D.117, M.120, D.121, R.126, E.182, Q.185, D.188, K.214, Y.218, K.280 Chain B: N.144, F.147 Ligands: MG.1, MG.2 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:E.182, A:Q.185, A:Q.185, A:K.214, A:K.214, B:F.147 Hydrogen bonds: A:D.117 Water bridges: A:D.118, A:S.123 Salt bridges: A:R.126, A:K.214, A:K.280, A:K.280 GPP.6: 15 residues within 4Å: Chain A: N.144, F.147 Chain B: S.113, D.117, M.120, D.121, R.126, E.182, Q.185, D.188, K.214, Y.218, K.280 Ligands: MG.4, MG.5 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:E.182, B:Q.185, B:Q.185, B:K.214, B:K.214, A:F.147 Hydrogen bonds: B:D.117 Water bridges: B:D.118, B:S.123 Salt bridges: B:R.126, B:K.214, B:K.280, B:K.280

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tarshis, L.C. et al., Regulation of product chain length by isoprenyl diphosphate synthases. Proc.Natl.Acad.Sci.USA (1996)

Release Date

1997-03-12

Peptides

FARNESYL DIPHOSPHATE SYNTHASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

FARNESYL DIPHOSPHATE SYNTHASE

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