SMTL ID : 1ubz.1

Crystal structure of Glu102-mutant human lysozyme doubly labeled with 2',3'-epoxypropyl beta-glycoside of N-acetyllactosamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x NAG- GAL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-GAL.1: 13 residues within 4Å: Chain A: Q.58, I.59, N.60, Y.63, W.64, E.102, Q.104, A.108, W.109 Ligands: NAG-GAL.2, NAG-GAL.2, GOL.3, GOL.4 7 PLIP interactions: 7 interactions with chain A Water bridges: A:Q.104, A:Q.104, A:Y.63 Hydrophobic interactions: A:W.109 Hydrogen bonds: A:N.60, A:N.60, A:Y.63, A:Q.104, A:A.108 NAG-GAL.2: 10 residues within 4Å: Chain A: Q.104, R.107, A.108, W.109, V.110, R.113 Ligands: NAG-GAL.1, NAG-GAL.1, GOL.3, GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.104, A:Q.104, A:Q.104, A:V.110, A:R.113

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: D.53, Q.58, N.60 Ligands: NAG-GAL.1, NAG-GAL.2, GOL.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:D.53 Hydrogen bonds: A:N.60 GOL.4: 9 residues within 4Å: Chain A: E.35, D.53, Q.58, A.108, W.109, V.110 Ligands: NAG-GAL.1, NAG-GAL.2, GOL.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.35 Hydrogen bonds: A:W.109, A:V.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muraki, M. et al., X-ray structural analysis of the ligand-recognition mechanism in the dual-affinity labeling of c-type lysozyme with 2',3'-epoxypropyl beta-glycoside of N-acetyllactosamine. J.MOL.RECOG. (2003)

Release Date

2003-04-22

Peptides

Lysozyme C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme C

Related Entries With Identical Sequence