SMTL ID : 1uc2.1

Hypothetical Extein Protein of PH1602 from Pyrococcus horikoshii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 7 residues within 4Å: Chain A: K.17, R.23, P.25, Y.57, K.58, V.339, D.340 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.58, A:K.17, A:R.23 Water bridges: A:K.17, A:K.17, A:K.17, A:K.17, A:K.58 GLC-FRU.2: 7 residues within 4Å: Chain B: K.17, R.23, P.25, Y.57, K.58, V.339, D.340 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.58, B:K.17, B:K.17, B:R.23 Water bridges: B:I.56

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: G.69, Y.70, I.74, G.93, Y.94, K.351 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.70, A:Y.94 Water bridges: A:D.95, A:N.330 Salt bridges: A:K.351 SO4.4: 5 residues within 4Å: Chain A: D.95, G.199, S.200, H.203, R.238 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.95, A:S.200, A:R.238 Water bridges: A:Q.194, A:G.236, A:G.236 Salt bridges: A:H.203, A:R.238 SO4.5: 2 residues within 4Å: Chain A: R.366, R.369 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.369 Salt bridges: A:R.366, A:R.369 SO4.6: 4 residues within 4Å: Chain A: S.439, M.440, R.441 Chain B: R.412 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:M.440, A:R.441 Salt bridges: A:R.441, B:R.412 SO4.7: 2 residues within 4Å: Chain A: K.212, R.472 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.212, A:R.472 SO4.8: 5 residues within 4Å: Chain B: D.95, G.199, S.200, H.203, R.238 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:D.95, B:S.200 Water bridges: B:G.236, B:R.238, B:R.238, B:R.238, B:G.239 Salt bridges: B:H.203, B:R.238 SO4.9: 3 residues within 4Å: Chain B: S.411, R.412, K.413 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.411, B:R.412, B:K.413 Salt bridges: B:R.412 SO4.10: 2 residues within 4Å: Chain B: K.212, R.472 5 PLIP interactions: 5 interactions with chain B Water bridges: B:K.212, B:R.472, B:R.472 Salt bridges: B:K.212, B:R.472 SO4.11: 2 residues within 4Å: Chain B: R.366, R.369 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.369, B:R.369 Salt bridges: B:R.369

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Okada, C. et al., Crystal structure of an RtcB homolog protein (PH1602-extein protein) from Pyrococcus horikoshii reveals a novel fold. Proteins (2006)

Release Date

2004-05-04

Peptides

hypothetical protein PH1602: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

hypothetical protein PH1602

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