SMTL ID : 1ucd.1

Crystal structure of Ribonuclease MC1 from bitter gourd seeds complexed with 5'-UMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)

U5P.1: 12 residues within 4Å: Chain A: Q.9, H.34, W.37, N.71, V.72, L.73, R.74, F.80, H.83, E.84, K.87, H.88 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:Q.9, A:W.37, A:N.71, A:N.71, A:V.72, A:L.73, A:R.74 Water bridges: A:R.74, A:R.74, A:K.87, A:K.87, A:K.87 Salt bridges: A:H.34, A:H.83, A:K.87, A:H.88 pi-Stacking: A:F.80

1 x URA: URACIL(Non-covalent)

URA.2: 7 residues within 4Å: Chain A: W.5, W.37, Q.39, G.42, T.43, S.44, R.181 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.39, A:Q.39, A:S.44, A:R.181 Water bridges: A:S.44 pi-Stacking: A:W.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, A. et al., Structure of RNase MC1 from bitter gourd seeds in complex with 5'UMP. To be published

Release Date

2004-05-18

Peptides

Ribonuclease MC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribonuclease MC

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