- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x NA: SODIUM ION(Non-functional Binders)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.4: 30 residues within 4Å:- Chain A: G.7, S.9, G.10, Y.11, I.12, D.31, N.32, L.33, C.34, N.35, S.36, G.57, D.58, I.59, R.60, F.80, A.81, G.82, K.84, N.99, S.122, S.123, S.124, Y.149, K.153, Y.177, F.178, P.180
- Ligands: UFG.5, EDO.7
25 PLIP interactions:25 interactions with chain A- Hydrophobic interactions: A:Y.177
- Hydrogen bonds: A:Y.11, A:I.12, A:N.32, A:N.32, A:C.34, A:N.35, A:N.35, A:S.36, A:D.58, A:I.59, A:F.80, A:G.82, A:K.84, A:S.122, A:Y.149, A:K.153
- Water bridges: A:G.10, A:G.13, A:G.82, A:L.83, A:N.99, A:N.199
- Salt bridges: A:K.84, A:K.84
NAD.11: 30 residues within 4Å:- Chain B: G.7, S.9, G.10, Y.11, I.12, D.31, N.32, L.33, C.34, N.35, S.36, G.57, D.58, I.59, R.60, F.80, A.81, G.82, K.84, N.99, S.122, S.123, S.124, Y.149, K.153, Y.177, F.178, P.180
- Ligands: UFG.12, EDO.14
24 PLIP interactions:24 interactions with chain B- Hydrophobic interactions: B:Y.177
- Hydrogen bonds: B:Y.11, B:I.12, B:N.32, B:N.32, B:C.34, B:N.35, B:N.35, B:S.36, B:D.58, B:I.59, B:F.80, B:G.82, B:K.84, B:S.122, B:K.153
- Water bridges: B:G.10, B:G.13, B:G.82, B:L.83, B:N.99, B:N.199
- Salt bridges: B:K.84, B:K.84
- 2 x UFG: URIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE(Non-covalent)
UFG.5: 21 residues within 4Å:- Chain A: V.86, S.124, T.126, Y.149, F.178, N.179, N.198, N.199, L.200, L.215, A.216, I.217, F.218, G.229, R.231, Y.233, V.269, R.292, D.295, Y.299
- Ligands: NAD.4
25 PLIP interactions:25 interactions with chain A- Hydrophobic interactions: A:L.200, A:F.218
- Hydrogen bonds: A:S.124, A:N.179, A:N.179, A:N.199, A:L.200, A:A.216, A:F.218, A:Y.233, A:Y.299
- Water bridges: A:S.124, A:F.178, A:M.201, A:A.216, A:R.231, A:R.231, A:R.292, A:R.292, A:R.292, A:D.295, A:D.295
- Salt bridges: A:R.231, A:R.292, A:R.292
UFG.12: 21 residues within 4Å:- Chain B: V.86, S.124, T.126, Y.149, F.178, N.179, N.198, N.199, L.200, L.215, A.216, I.217, F.218, G.229, R.231, Y.233, V.269, R.292, D.295, Y.299
- Ligands: NAD.11
24 PLIP interactions:24 interactions with chain B- Hydrophobic interactions: B:L.200, B:F.218
- Hydrogen bonds: B:S.124, B:N.179, B:N.179, B:N.199, B:L.200, B:A.216, B:F.218
- Water bridges: B:S.124, B:Y.149, B:F.178, B:M.201, B:A.216, B:R.231, B:R.231, B:R.231, B:R.292, B:D.295, B:D.295, B:Y.299
- Salt bridges: B:R.231, B:R.292, B:R.292
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.7: 7 residues within 4Å:- Chain A: Y.11, N.35, G.190, E.191, D.192, P.193
- Ligands: NAD.4
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.35, A:D.192
- Water bridges: A:G.10, A:K.84
EDO.14: 7 residues within 4Å:- Chain B: Y.11, N.35, G.190, E.191, D.192, P.193
- Ligands: NAD.11
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.35, B:D.192
- Water bridges: B:G.10, B:K.84
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., Structural analysis of UDP-sugar binding to UDP-galactose 4-epimerase from Escherichia coli. Biochemistry (1997)
- Release Date
- 1998-01-14
- Peptides
- UDP-GALACTOSE-4-EPIMERASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x NA: SODIUM ION(Non-functional Binders)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 2 x UFG: URIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE(Non-covalent)
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., Structural analysis of UDP-sugar binding to UDP-galactose 4-epimerase from Escherichia coli. Biochemistry (1997)
- Release Date
- 1998-01-14
- Peptides
- UDP-GALACTOSE-4-EPIMERASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A