SMTL ID : 1ug9.1

Crystal Structure of Glucodextranase from Arthrobacter globiformis I42

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: L.139, T.142, G.144, D.146, D.159 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:L.139, A:T.142, A:T.142, A:G.144, A:D.146, A:D.159 CA.2: 3 residues within 4Å: Chain A: F.358, Q.362, E.409 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:F.358, A:E.409, H2O.403 CA.3: 4 residues within 4Å: Chain A: D.136, P.137, N.211, I.212 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.136, A:P.137, A:I.212, H2O.60 CA.4: 5 residues within 4Å: Chain A: V.946, A.969, D.980, D.982, D.985 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:V.946, A:A.969, A:D.980, A:D.982, A:D.985 CA.5: 7 residues within 4Å: Chain A: D.782, P.783, D.786, D.807, L.808, D.990 Ligands: CA.6 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.782, A:P.783, A:D.807, A:L.808, A:D.990 CA.6: 6 residues within 4Å: Chain A: D.782, D.786, D.990, V.991, Q.999 Ligands: CA.5 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.782, A:D.782, A:D.786, A:V.991, H2O.198

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 7 residues within 4Å: Chain A: G.526, G.527, L.529, W.565, L.594, E.597, R.598 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.597, A:E.597, A:R.598 Water bridges: A:G.526

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mizuno, M. et al., Structural insights into substrate specificity and function of glucodextranase. J.Biol.Chem. (2004)

Release Date

2003-12-09

Peptides

glucodextranase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

glucodextranase

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