- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 2 x GP1: 2-amino-2-deoxy-1-O-phosphono-alpha-D-glucopyranose(Non-covalent)
- 2 x LIM: 3-OXO-PENTADECANOIC ACID(Non-covalent)
LIM.3: 8 residues within 4Å:- Chain A: W.144, G.145, V.551, G.563, K.564, Y.586, L.588
- Ligands: GP1.2
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:W.144, A:V.551, A:Y.586, A:L.588
- Hydrogen bonds: A:W.144
LIM.12: 3 residues within 4Å:- Chain A: W.300, T.338
- Ligands: GP1.1
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:W.300, A:W.300, A:T.338
- 7 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
LDA.4: 7 residues within 4Å:- Chain A: G.204, A.205, V.218, W.250, D.251, S.268, Y.269
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.218, A:W.250, A:W.250, A:W.250
LDA.5: 8 residues within 4Å:- Chain A: L.168, L.202, Y.203, G.204, G.220, Q.248, W.250
- Ligands: LDA.6
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.168, A:L.202, A:W.250, A:W.250
LDA.6: 11 residues within 4Å:- Chain A: Y.152, D.153, V.154, G.170, D.171, K.200, T.201, G.222, Y.223, D.224
- Ligands: LDA.5
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.154
- Salt bridges: A:D.224
LDA.7: 8 residues within 4Å:- Chain A: W.300, N.302, A.313, V.315, T.338, D.361
- Ligands: GP1.1, LDA.9
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:W.300, A:V.315, A:V.315, A:T.338
- Hydrogen bonds: A:T.338
- Salt bridges: A:D.361
LDA.8: 5 residues within 4Å:- Chain A: V.306, G.344, L.345, Q.346, G.355
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.306, A:Q.346
LDA.9: 7 residues within 4Å:- Chain A: Y.256, I.261, S.263, N.302
- Ligands: LDA.7, LDA.10, GOL.16
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:Y.256, A:I.261
LDA.10: 5 residues within 4Å:- Chain A: W.214, L.254, S.263, L.265
- Ligands: LDA.9
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:W.214, A:L.265
- 1 x AAE: ACETOACETIC ACID(Non-functional Binders)
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.13: 3 residues within 4Å:- Chain A: N.72, A.73, S.74
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.73, A:S.74, A:S.74
GOL.14: 8 residues within 4Å:- Chain A: A.102, L.103, Q.105, T.131, S.155, T.167, L.169, Y.203
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.103
GOL.15: 3 residues within 4Å:- Chain A: T.7, T.30, R.106
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.7
GOL.16: 6 residues within 4Å:- Chain A: Y.256, G.258, E.259, L.260, I.261
- Ligands: LDA.9
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.256, A:E.259, A:L.260
GOL.17: 3 residues within 4Å:- Chain A: K.273, Y.275, R.283
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.275, A:R.283
GOL.18: 3 residues within 4Å:- Chain A: R.367, H.368, G.369
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.367, A:G.369
GOL.19: 2 residues within 4Å:- Chain A: S.545, K.571
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.545
GOL.20: 3 residues within 4Å:- Chain A: T.556, H.558, Y.592
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:H.558, A:Y.592, A:Y.592
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kurisu, G. et al., The structure of BtuB with bound colicin E3 R-domain implies a translocon. NAT.STRUCT.BIOL. (2003)
- Release Date
- 2003-11-25
- Peptides
- Vitamin B12 receptor: A
Colicin E3: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 2 x GP1: 2-amino-2-deoxy-1-O-phosphono-alpha-D-glucopyranose(Non-covalent)
- 2 x LIM: 3-OXO-PENTADECANOIC ACID(Non-covalent)
- 7 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
- 1 x AAE: ACETOACETIC ACID(Non-functional Binders)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kurisu, G. et al., The structure of BtuB with bound colicin E3 R-domain implies a translocon. NAT.STRUCT.BIOL. (2003)
- Release Date
- 2003-11-25
- Peptides
- Vitamin B12 receptor: A
Colicin E3: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.