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SMTL ID : 1uky.1
SUBSTRATE SPECIFICITY AND ASSEMBLY OF CATALYTIC CENTER DERIVED FROM TWO STRUCTURES OF LIGATED URIDYLATE KINASE
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.13 Å
Oligo State
monomer
Ligands
2 x
ADP
:
ADENOSINE-5'-DIPHOSPHATE
(Non-covalent)
ADP.1:
15 residues within 4Å:
Chain A:
G.23
,
P.24
,
G.25
,
A.26
,
G.27
,
K.28
,
G.29
,
T.30
,
R.137
,
R.141
,
C.184
,
R.186
,
S.187
,
V.188
Ligands:
ADP.2
15
PLIP interactions
:
15 interactions with chain A
Hydrogen bonds:
A:G.23
,
A:G.25
,
A:A.26
,
A:G.27
,
A:K.28
,
A:G.29
,
A:T.30
,
A:T.30
,
A:R.186
Water bridges:
A:T.30
,
A:V.188
Salt bridges:
A:K.28
,
A:R.141
,
A:R.141
pi-Cation interactions:
A:R.137
ADP.2:
21 residues within 4Å:
Chain A:
P.24
,
K.28
,
A.46
,
G.47
,
L.50
,
R.51
,
C.68
,
I.69
,
Q.73
,
I.74
,
V.75
,
T.80
,
G.103
,
F.104
,
R.106
,
Q.110
,
R.141
,
R.147
,
D.149
,
R.158
Ligands:
ADP.1
22
PLIP interactions
:
22 interactions with chain A
Hydrogen bonds:
A:G.47
,
A:C.68
,
A:V.75
,
A:T.80
,
A:R.106
,
A:R.106
,
A:Q.110
,
A:Q.110
Water bridges:
A:S.45
,
A:D.102
,
A:R.147
,
A:D.149
,
A:R.158
,
A:R.158
Salt bridges:
A:K.28
,
A:R.51
,
A:R.106
,
A:R.106
,
A:R.141
,
A:R.147
,
A:R.147
,
A:R.158
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Muller-Dieckmann, H.J. et al., Substrate specificity and assembly of the catalytic center derived from two structures of ligated uridylate kinase. J.Mol.Biol. (1995)
Release Date
1995-01-26
Peptides
URIDYLATE KINASE:
A
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
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URIDYLATE KINASE
Related Entries With Identical Sequence
1ukz.1
Cartoon
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Tube
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Licorice
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