SMTL ID : 1uli.1

Biphenyl dioxygenase (BphA1A2) derived from Rhodococcus sp. strain RHA1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-3-3-mer

Ligands

4 x FE2: FE (II) ION(Non-covalent)

FE2.1: 4 residues within 4Å: Chain A: Q.217, H.224, H.230, D.378 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.224, A:H.230, A:D.378, A:D.378, H2O.7 FE2.3: 3 residues within 4Å: Chain B: H.24 Chain D: H.24 Chain F: H.24 6 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: F:H.24, D:H.24, B:H.24, H2O.9, H2O.9, H2O.18 FE2.4: 4 residues within 4Å: Chain C: Q.217, H.224, H.230, D.378 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.224, C:H.230, C:D.378, C:D.378, H2O.16 FE2.6: 4 residues within 4Å: Chain E: Q.217, H.224, H.230, D.378 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.224, E:H.230, E:D.378, E:D.378, H2O.26

3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.2: 9 residues within 4Å: Chain A: C.98, H.100, R.101, M.103, C.118, Y.120, H.121, G.122, W.123 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.98, A:H.100, A:C.118, A:H.121 FES.5: 9 residues within 4Å: Chain C: C.98, H.100, R.101, M.103, C.118, Y.120, H.121, G.122, W.123 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.98, C:H.100, C:C.118, C:H.121 FES.7: 10 residues within 4Å: Chain E: C.98, H.100, R.101, G.102, M.103, C.118, Y.120, H.121, G.122, W.123 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.98, E:H.100, E:C.118, E:H.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Furusawa, Y. et al., Crystal Structure of the Terminal Oxygenase Component of Biphenyl Dioxygenase Derived from Rhodococcus sp. Strain RHA1. J.Mol.Biol. (2004)

Release Date

2004-09-28

Peptides

biphenyl dioxygenase large subunit: ACE
biphenyl dioxygenase small subunit: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

biphenyl dioxygenase large subunit

biphenyl dioxygenase small subunit

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