SMTL ID : 1up8.1

Recombinant vanadium-dependent bromoperoxidase from red algae Corallina pilulifera

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-12-mer

Ligands

48 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 10 residues within 4Å: Chain A: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: PO4.4 Ligand excluded by PLIP PO4.3: 5 residues within 4Å: Chain A: R.217, G.218, N.224, I.229, E.234 Ligand excluded by PLIP PO4.4: 7 residues within 4Å: Chain A: E.126, P.478, H.480, H.487, R.547 Chain B: F.373 Ligands: PO4.1 Ligand excluded by PLIP PO4.5: 5 residues within 4Å: Chain A: N.264, D.267 Chain B: R.285, G.318, A.319 Ligand excluded by PLIP PO4.6: 10 residues within 4Å: Chain B: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: PO4.9 Ligand excluded by PLIP PO4.8: 5 residues within 4Å: Chain B: R.217, G.218, N.224, I.229, E.234 Ligand excluded by PLIP PO4.9: 7 residues within 4Å: Chain A: F.373 Chain B: E.126, P.478, H.480, H.487, R.547 Ligands: PO4.6 Ligand excluded by PLIP PO4.10: 6 residues within 4Å: Chain A: R.285, G.318, A.319 Chain B: N.264, D.267, E.272 Ligand excluded by PLIP PO4.11: 10 residues within 4Å: Chain C: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: PO4.14 Ligand excluded by PLIP PO4.13: 5 residues within 4Å: Chain C: R.217, G.218, N.224, I.229, E.234 Ligand excluded by PLIP PO4.14: 7 residues within 4Å: Chain C: E.126, P.478, H.480, H.487, R.547 Chain D: F.373 Ligands: PO4.11 Ligand excluded by PLIP PO4.15: 6 residues within 4Å: Chain C: N.264, D.267, E.272 Chain D: R.285, G.318, A.319 Ligand excluded by PLIP PO4.16: 10 residues within 4Å: Chain D: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: PO4.19 Ligand excluded by PLIP PO4.18: 5 residues within 4Å: Chain D: R.217, G.218, N.224, I.229, E.234 Ligand excluded by PLIP PO4.19: 7 residues within 4Å: Chain C: F.373 Chain D: E.126, P.478, H.480, H.487, R.547 Ligands: PO4.16 Ligand excluded by PLIP PO4.20: 4 residues within 4Å: Chain C: R.285, A.319 Chain D: N.264, D.267 Ligand excluded by PLIP PO4.21: 10 residues within 4Å: Chain E: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: PO4.24 Ligand excluded by PLIP PO4.23: 5 residues within 4Å: Chain E: R.217, G.218, N.224, I.229, E.234 Ligand excluded by PLIP PO4.24: 7 residues within 4Å: Chain E: E.126, P.478, H.480, H.487, R.547 Chain F: F.373 Ligands: PO4.21 Ligand excluded by PLIP PO4.25: 5 residues within 4Å: Chain E: N.264, D.267 Chain F: R.285, G.318, A.319 Ligand excluded by PLIP PO4.26: 10 residues within 4Å: Chain F: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: PO4.29 Ligand excluded by PLIP PO4.28: 5 residues within 4Å: Chain F: R.217, G.218, N.224, I.229, E.234 Ligand excluded by PLIP PO4.29: 7 residues within 4Å: Chain E: F.373 Chain F: E.126, P.478, H.480, H.487, R.547 Ligands: PO4.26 Ligand excluded by PLIP PO4.30: 6 residues within 4Å: Chain E: R.285, G.318, A.319 Chain F: N.264, D.267, E.272 Ligand excluded by PLIP PO4.31: 10 residues within 4Å: Chain G: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: PO4.34 Ligand excluded by PLIP PO4.33: 5 residues within 4Å: Chain G: R.217, G.218, N.224, I.229, E.234 Ligand excluded by PLIP PO4.34: 7 residues within 4Å: Chain G: E.126, P.478, H.480, H.487, R.547 Chain H: F.373 Ligands: PO4.31 Ligand excluded by PLIP PO4.35: 6 residues within 4Å: Chain G: N.264, D.267, E.272 Chain H: R.285, G.318, A.319 Ligand excluded by PLIP PO4.36: 10 residues within 4Å: Chain H: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: PO4.39 Ligand excluded by PLIP PO4.38: 5 residues within 4Å: Chain H: R.217, G.218, N.224, I.229, E.234 Ligand excluded by PLIP PO4.39: 7 residues within 4Å: Chain G: F.373 Chain H: E.126, P.478, H.480, H.487, R.547 Ligands: PO4.36 Ligand excluded by PLIP PO4.40: 4 residues within 4Å: Chain G: R.285, A.319 Chain H: N.264, D.267 Ligand excluded by PLIP PO4.41: 10 residues within 4Å: Chain I: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: PO4.44 Ligand excluded by PLIP PO4.43: 5 residues within 4Å: Chain I: R.217, G.218, N.224, I.229, E.234 Ligand excluded by PLIP PO4.44: 7 residues within 4Å: Chain I: E.126, P.478, H.480, H.487, R.547 Chain J: F.373 Ligands: PO4.41 Ligand excluded by PLIP PO4.45: 5 residues within 4Å: Chain I: N.264, D.267 Chain J: R.285, G.318, A.319 Ligand excluded by PLIP PO4.46: 10 residues within 4Å: Chain J: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: PO4.49 Ligand excluded by PLIP PO4.48: 5 residues within 4Å: Chain J: R.217, G.218, N.224, I.229, E.234 Ligand excluded by PLIP PO4.49: 7 residues within 4Å: Chain I: F.373 Chain J: E.126, P.478, H.480, H.487, R.547 Ligands: PO4.46 Ligand excluded by PLIP PO4.50: 6 residues within 4Å: Chain I: R.285, G.318, A.319 Chain J: N.264, D.267, E.272 Ligand excluded by PLIP PO4.51: 10 residues within 4Å: Chain K: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: PO4.54 Ligand excluded by PLIP PO4.53: 5 residues within 4Å: Chain K: R.217, G.218, N.224, I.229, E.234 Ligand excluded by PLIP PO4.54: 7 residues within 4Å: Chain K: E.126, P.478, H.480, H.487, R.547 Chain L: F.373 Ligands: PO4.51 Ligand excluded by PLIP PO4.55: 6 residues within 4Å: Chain K: N.264, D.267, E.272 Chain L: R.285, G.318, A.319 Ligand excluded by PLIP PO4.56: 10 residues within 4Å: Chain L: K.400, R.408, P.478, H.480, S.485, G.486, H.487, R.547, H.553 Ligands: PO4.59 Ligand excluded by PLIP PO4.58: 5 residues within 4Å: Chain L: R.217, G.218, N.224, I.229, E.234 Ligand excluded by PLIP PO4.59: 7 residues within 4Å: Chain K: F.373 Chain L: E.126, P.478, H.480, H.487, R.547 Ligands: PO4.56 Ligand excluded by PLIP PO4.60: 4 residues within 4Å: Chain K: R.285, A.319 Chain L: N.264, D.267 Ligand excluded by PLIP

12 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Q.363, A:D.365, A:D.368, A:Q.370, H2O.16 CA.7: 5 residues within 4Å: Chain B: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:Q.363, B:D.365, B:D.368, B:Q.370, H2O.39 CA.12: 5 residues within 4Å: Chain C: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:Q.363, C:D.365, C:D.368, C:Q.370, H2O.61 CA.17: 5 residues within 4Å: Chain D: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:Q.363, D:D.365, D:D.368, D:Q.370, H2O.83 CA.22: 5 residues within 4Å: Chain E: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:Q.363, E:D.365, E:D.368, E:Q.370, H2O.105 CA.27: 5 residues within 4Å: Chain F: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:Q.363, F:D.365, F:D.368, F:Q.370, H2O.128 CA.32: 5 residues within 4Å: Chain G: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:Q.363, G:D.365, G:D.368, G:Q.370, H2O.151 CA.37: 5 residues within 4Å: Chain H: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:Q.363, H:D.365, H:D.368, H:Q.370, H2O.173 CA.42: 5 residues within 4Å: Chain I: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:Q.363, I:D.365, I:D.368, I:Q.370, H2O.195 CA.47: 5 residues within 4Å: Chain J: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:Q.363, J:D.365, J:D.368, J:Q.370, H2O.218 CA.52: 5 residues within 4Å: Chain K: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:Q.363, K:D.365, K:D.368, K:Q.370, H2O.240 CA.57: 5 residues within 4Å: Chain L: F.361, Q.363, D.365, D.368, Q.370 5 PLIP interactions: 4 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:Q.363, L:D.365, L:D.368, L:Q.370, H2O.262

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Rodriguez, E. et al., Enhancing Effect of Calcium and Vanadium Ions on Thermal Stability of Bromoperoxidase from Corallina Pilulifera. J.Biol.Inorg.Chem. (2005)

Release Date

2003-09-30

Peptides

VANADIUM-DEPENDENT BROMOPEROXIDASE 1: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

I
A

J
B

K
C

L
D

VANADIUM-DEPENDENT BROMOPEROXIDASE 1

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