SMTL ID : 1uqr.1

Type II 3-dehydroquinate dehydratase (DHQase) from Actinobacillus pleuropneumoniae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-12-mer

Ligands

31 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: G.53, E.54, E.55 Chain B: G.53, E.54, E.55 Chain C: G.53, E.54, E.55 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: N.74, H.100, L.101, S.102 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain B: N.74, H.100, L.101, S.102 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain B: K.17, T.27, S.29 Ligand excluded by PLIP SO4.6: 4 residues within 4Å: Chain C: N.74, H.100, L.101, S.102 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain C: K.17, T.27, S.29, D.30 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain C: L.15, G.16, K.17, R.18 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain D: N.74, H.100, L.101, S.102 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain D: K.17, T.27, S.29 Ligand excluded by PLIP SO4.11: 8 residues within 4Å: Chain D: L.15, G.16, K.17, R.18, H.21, I.22, Y.23, G.24 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain E: N.74, H.100, L.101, S.102 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain E: K.17, T.27, S.29, D.30 Ligand excluded by PLIP SO4.14: 7 residues within 4Å: Chain E: L.15, G.16, K.17, R.18, I.22, Y.23, G.24 Ligand excluded by PLIP SO4.16: 9 residues within 4Å: Chain D: G.53, E.54, E.55 Chain E: G.53, E.54, E.55 Chain F: G.53, E.54, E.55 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain F: N.74, H.100, L.101, S.102 Ligand excluded by PLIP SO4.18: 4 residues within 4Å: Chain F: K.17, T.27, S.29, D.30 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain F: L.15, G.16, K.17, R.18 Ligand excluded by PLIP SO4.20: 4 residues within 4Å: Chain G: N.74, H.100, L.101, S.102 Ligand excluded by PLIP SO4.21: 9 residues within 4Å: Chain G: G.53, E.54, E.55 Chain H: G.53, E.54, E.55 Chain I: G.53, E.54, E.55 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain H: N.74, H.100, L.101, S.102 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain H: K.17, T.27, S.29 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain H: L.15, G.16, K.17, R.18 Ligand excluded by PLIP SO4.26: 5 residues within 4Å: Chain I: R.18, N.74, H.100, L.101, S.102 Ligand excluded by PLIP SO4.27: 4 residues within 4Å: Chain J: N.74, H.100, L.101, S.102 Ligand excluded by PLIP SO4.28: 3 residues within 4Å: Chain J: K.17, T.27, S.29 Ligand excluded by PLIP SO4.29: 7 residues within 4Å: Chain J: L.15, G.16, K.17, R.18, I.22, Y.23, G.24 Ligand excluded by PLIP SO4.30: 4 residues within 4Å: Chain K: N.74, H.100, L.101, S.102 Ligand excluded by PLIP SO4.31: 8 residues within 4Å: Chain K: L.15, G.16, K.17, R.18, H.21, I.22, Y.23, G.24 Ligand excluded by PLIP SO4.32: 1 residues within 4Å: Chain K: M.1 Ligand excluded by PLIP SO4.34: 9 residues within 4Å: Chain J: G.53, E.54, E.55 Chain K: G.53, E.54, E.55 Chain L: G.53, E.54, E.55 Ligand excluded by PLIP SO4.35: 4 residues within 4Å: Chain L: N.74, H.100, L.101, S.102 Ligand excluded by PLIP

4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.5: 11 residues within 4Å: Chain A: E.54, F.78, T.81, S.82 Chain B: E.54, F.78, T.81, S.82 Chain C: E.54, T.81, S.82 7 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B, 2 interactions with chain C Hydrogen bonds: A:E.54, A:T.81, A:T.81, B:T.81, C:T.81 Water bridges: A:V.83, C:V.83 TRS.15: 9 residues within 4Å: Chain D: E.54, T.81, S.82 Chain E: E.54, T.81, S.82 Chain F: E.54, T.81, S.82 8 PLIP interactions: 3 interactions with chain D, 2 interactions with chain F, 3 interactions with chain E Hydrogen bonds: D:E.54, D:T.81, F:T.81, E:T.81, E:T.81 Water bridges: D:V.83, F:V.83, E:V.83 TRS.25: 10 residues within 4Å: Chain G: E.54, T.81, S.82 Chain H: E.54, F.78, T.81, S.82 Chain I: E.54, T.81, S.82 9 PLIP interactions: 3 interactions with chain I, 4 interactions with chain G, 2 interactions with chain H Hydrogen bonds: I:T.81, I:T.81, G:E.54, G:T.81, G:T.81, H:T.81 Water bridges: I:V.83, G:V.83, H:V.83 TRS.33: 11 residues within 4Å: Chain J: E.54, T.81, S.82 Chain K: E.54, F.78, T.81, S.82 Chain L: E.54, F.78, T.81, S.82 8 PLIP interactions: 2 interactions with chain K, 3 interactions with chain L, 3 interactions with chain J Hydrogen bonds: K:T.81, L:T.81, L:T.81, J:E.54, J:T.81 Water bridges: K:V.83, L:V.83, J:V.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maes, D. et al., Structural Study of the Type II 3-Dehydroquinate Dehydratase from Actinobacillus Pleuropneumoniae. Acta Crystallogr.,Sect.D (2004)

Release Date

2003-10-30

Peptides

3-DEHYDROQUINATE DEHYDRATASE: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

3-DEHYDROQUINATE DEHYDRATASE