- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 12 x CD: CADMIUM ION(Non-covalent)
CD.2: 2 residues within 4Å:- Chain A: E.178
- Ligands: CL.5
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.178, H2O.6, H2O.7
CD.3: 1 residues within 4Å:- Chain A: E.165
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.165, A:E.165, H2O.19
CD.4: 1 residues within 4Å:- Chain A: D.200
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:D.200, A:D.200
CD.8: 1 residues within 4Å:- Chain B: E.178
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:E.178, H2O.15, H2O.16, H2O.16
CD.9: 1 residues within 4Å:- Chain B: E.165
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.165, B:E.165, H2O.9
CD.10: 1 residues within 4Å:- Chain B: E.159
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.159, B:E.159, H2O.17
CD.13: 2 residues within 4Å:- Chain C: E.178
- Ligands: CL.16
3 PLIP interactions:1 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.178, H2O.28, H2O.28
CD.14: 1 residues within 4Å:- Chain C: E.165
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.165, C:E.165, H2O.40
CD.15: 1 residues within 4Å:- Chain C: D.200
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:D.200, C:D.200
CD.19: 1 residues within 4Å:- Chain D: E.178
4 PLIP interactions:1 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:E.178, H2O.36, H2O.37, H2O.37
CD.20: 1 residues within 4Å:- Chain D: E.165
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.165, D:E.165, H2O.30
CD.21: 1 residues within 4Å:- Chain D: E.159
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.159, D:E.159, H2O.38
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.6: 3 residues within 4Å:- Chain A: H.19
- Chain C: H.19
- Ligands: NA.17
7 PLIP interactions:5 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:H.19
- Water bridges: A:T.16, A:H.19, A:Y.227, A:Y.227, C:T.16, C:Y.227
NA.11: 3 residues within 4Å:- Chain B: H.19
- Chain D: H.19
- Ligands: NA.22
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain D- Water bridges: B:T.16, B:Y.227, D:T.16, D:Y.227
- Hydrogen bonds: D:H.19
NA.17: 3 residues within 4Å:- Chain A: H.19
- Chain C: H.19
- Ligands: NA.6
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:H.19, C:H.19
- Water bridges: A:Y.227
NA.22: 3 residues within 4Å:- Chain B: H.19
- Chain D: H.19
- Ligands: NA.11
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain B- Hydrogen bonds: D:H.19
- Water bridges: D:T.16, D:Y.227, B:T.16, B:Y.227
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bjork, A. et al., Stabilization of a Tetrameric Malate Dehydrogenase by Introduction of a Disulfide Bridge at the Dimer-Dimer Interface. J.Mol.Biol. (2003)
- Release Date
- 2003-11-05
- Peptides
- MALATE DEHYDROGENASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
AD
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 12 x CD: CADMIUM ION(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bjork, A. et al., Stabilization of a Tetrameric Malate Dehydrogenase by Introduction of a Disulfide Bridge at the Dimer-Dimer Interface. J.Mol.Biol. (2003)
- Release Date
- 2003-11-05
- Peptides
- MALATE DEHYDROGENASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
AD
C