- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GDL- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-(acetylamido)-2-deoxy-D-glucono-1,5-lactone(Non-covalent)
- 9 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 6 residues within 4Å:- Chain A: P.260, F.263, S.264, R.439, Y.440, T.441
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.264, A:S.264, A:T.441, A:T.441
- Water bridges: A:S.264
GOL.4: 4 residues within 4Å:- Chain A: N.55, S.56, P.64, N.109
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.56
- Water bridges: A:N.109
GOL.5: 3 residues within 4Å:- Chain A: R.343, Q.347, R.410
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.343, A:Q.347, A:R.410
- Water bridges: A:R.343, A:R.410
GOL.9: 5 residues within 4Å:- Chain B: P.260, F.263, S.264, Y.440, T.441
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.264, B:S.264, B:T.441
GOL.10: 7 residues within 4Å:- Chain B: Y.323, L.325, V.326, G.327, C.328, E.329, V.332
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.323, B:G.327
GOL.11: 9 residues within 4Å:- Chain A: F.190, S.193, R.194
- Chain B: W.479, I.482, T.483, S.484, D.489, A.491
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:S.193, A:R.194, B:T.483, B:S.484, B:S.484, B:D.489
GOL.12: 6 residues within 4Å:- Chain B: R.162, A.204, P.205, L.206, D.207, K.284
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:R.162, B:K.284
- Water bridges: B:R.162, B:R.162, B:Q.180, B:A.204, B:D.207, B:K.284
GOL.13: 7 residues within 4Å:- Chain A: W.479, G.480, Y.481, I.482
- Chain B: F.190, F.191, R.194
6 PLIP interactions:2 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:F.190, B:R.194
- Water bridges: A:G.480, A:G.480, A:G.480, A:D.489
GOL.14: 2 residues within 4Å:- Chain B: P.454, A.455
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.455
- Water bridges: B:S.469, B:S.469
- 7 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 1 residues within 4Å:- Chain A: R.420
6 PLIP interactions:6 interactions with chain A- Water bridges: A:R.420, A:D.426, A:D.426, A:D.426, A:D.426
- Salt bridges: A:R.420
SO4.7: 5 residues within 4Å:- Chain A: P.14, N.16, Q.17, V.28, R.333
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.333
SO4.8: 2 residues within 4Å:- Chain A: P.281, S.282
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.282
- Water bridges: A:S.282, A:S.282, A:A.283
SO4.15: 1 residues within 4Å:- Chain B: R.420
4 PLIP interactions:4 interactions with chain B- Water bridges: B:R.420, B:R.420, B:D.426
- Salt bridges: B:R.420
SO4.16: 2 residues within 4Å:- Chain B: P.281, S.282
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.282
- Water bridges: B:S.282, B:S.282, B:A.283
SO4.17: 5 residues within 4Å:- Chain B: P.14, N.16, Q.17, V.28, R.333
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.16, B:Q.17, B:Q.17
- Water bridges: B:R.333, B:R.333
- Salt bridges: B:R.333
SO4.18: 3 residues within 4Å:- Chain B: R.294
- Ligands: GDL-NAG.2, GDL-NAG.2
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.294
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vaaje-Kolstad, G. et al., Interactions of a Family 18 Chitinase with the Designed Inhibitor Hm508 and its Degradation Product, Chitobiono-Delta-Lactone. J.Biol.Chem. (2004)
- Release Date
- 2004-04-27
- Peptides
- CHITINASE B: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GDL- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-(acetylamido)-2-deoxy-D-glucono-1,5-lactone(Non-covalent)
- 9 x GOL: GLYCEROL(Non-functional Binders)
- 7 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vaaje-Kolstad, G. et al., Interactions of a Family 18 Chitinase with the Designed Inhibitor Hm508 and its Degradation Product, Chitobiono-Delta-Lactone. J.Biol.Chem. (2004)
- Release Date
- 2004-04-27
- Peptides
- CHITINASE B: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B