SMTL ID : 1us3.1

Native xylanase10C from Cellvibrio japonicus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: A.180, V.181, S.182, G.211, N.212, G.469, T.470, N.474 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.182, A:N.212, A:T.470 Water bridges: A:E.197, A:N.212, A:T.470, A:N.474, A:N.474, A:N.474, A:N.474, A:W.476

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 11 residues within 4Å: Chain A: G.211, K.215, H.248, W.252, N.300, E.301, Q.382, H.384, E.413, W.468, W.476 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.211, A:K.215, A:N.300, A:N.300, A:Q.382 Water bridges: A:N.212, A:Q.382, A:Q.382

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: D.285, E.288, A.339 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.285 NA.4: 2 residues within 4Å: Chain A: N.206, T.244 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.244 Water bridges: A:H.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pell, G. et al., Structural and Biochemical Analysis of Cellvibrio Japonicus Xylanase 10C: How Variation in Substrate-Binding Cleft Influences the Catalytic Profile of Family Gh-10 Xylanases. J.Biol.Chem. (2004)

Release Date

2003-12-18

Peptides

ENDO-BETA-1,4-XYLANASE PRECURSOR: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDO-BETA-1,4-XYLANASE PRECURSOR