SMTL ID : 1usf.1

PUTATIVE STYRENE MONOOXYGENASE SMALL COMPONENT WITH BOUND NADP+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 25 residues within 4Å: Chain A: N.33, C.35, P.36, A.37, V.38, W.39, S.53, I.54, S.55, R.58, F.59, T.60, L.86, G.87, S.88, H.89, S.90, G.91, R.92, K.96, H.131, Y.162, Y.168 Ligands: NAP.2, GOL.4 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:P.36, A:V.38, A:Y.162, A:Y.162, A:Y.168 Hydrogen bonds: A:N.33, A:P.36, A:V.38, A:W.39, A:S.53, A:S.55, A:R.58, A:R.58, A:F.59, A:T.60, A:T.60, A:G.87, A:H.89, A:S.90, A:G.91, A:R.92, A:K.96 Water bridges: A:R.58 Salt bridges: A:K.96 FMN.5: 25 residues within 4Å: Chain B: N.33, C.35, P.36, A.37, V.38, W.39, S.53, I.54, S.55, R.58, F.59, T.60, L.86, G.87, S.88, H.89, S.90, G.91, R.92, K.96, H.131, Y.162, Y.168 Ligands: NAP.6, GOL.8 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:P.36, B:V.38, B:Y.162, B:Y.162, B:Y.168 Hydrogen bonds: B:N.33, B:P.36, B:V.38, B:W.39, B:S.53, B:S.55, B:R.58, B:R.58, B:F.59, B:T.60, B:G.87, B:H.89, B:S.90, B:G.91, B:R.92, B:K.96 Salt bridges: B:K.96

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 11 residues within 4Å: Chain A: Y.14, Y.17, R.58, H.84, G.87, Y.162, G.164, K.165, G.166 Ligands: FMN.1, GOL.4 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.58, A:Y.162, A:K.165 Water bridges: A:Y.14, A:R.58, A:R.58, A:R.58, A:K.165 NAP.3: 6 residues within 4Å: Chain A: S.3, Y.4, R.5 Chain B: H.105, V.139, A.140 9 PLIP interactions: 2 interactions with chain B, 7 interactions with chain A Salt bridges: B:H.105, A:R.5 pi-Stacking: B:H.105 Hydrogen bonds: A:S.3, A:R.5, A:R.5 Water bridges: A:R.5, A:R.5 pi-Cation interactions: A:R.5 NAP.6: 11 residues within 4Å: Chain B: Y.14, Y.17, R.58, H.84, G.87, Y.162, G.164, K.165, G.166 Ligands: FMN.5, GOL.8 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:Y.14, B:Y.17, B:R.58, B:Y.162, B:Y.162, B:K.165 Water bridges: B:Y.14, B:R.58, B:R.58, B:R.58, B:R.58, B:H.84, B:K.165 NAP.7: 6 residues within 4Å: Chain A: H.105, V.139, A.140 Chain B: S.3, Y.4, R.5 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.3, B:R.5 Water bridges: B:R.5, B:R.5, A:H.105 Salt bridges: B:R.5, A:H.105 pi-Cation interactions: B:R.5 pi-Stacking: A:H.105

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: Y.17, V.38, W.39, R.58, H.131 Ligands: FMN.1, NAP.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.17, A:R.58 Water bridges: A:R.58 GOL.8: 7 residues within 4Å: Chain B: Y.17, V.38, W.39, R.58, H.131 Ligands: FMN.5, NAP.6 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.17, B:Y.17, B:R.58 Water bridges: B:R.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takahashi, H. et al., Crystal Structure of Putative Styrene Monooxygenase Small Component from Thermus Thermophilus. To be Published

Release Date

2003-11-25

Peptides

PUTATIVE STYRENE MONOOXYGENASE SMALL COMPONENT: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PUTATIVE STYRENE MONOOXYGENASE SMALL COMPONENT

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