SMTL ID : 1usy.1

ATP phosphoribosyl transferase (HisG:HisZ) complex from Thermotoga maritima

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

hetero-3-1-3-1-mer

Ligands

8 x HIS: HISTIDINE(Non-covalent)(Covalent)

HIS.1: 7 residues within 4Å: Chain C: K.157, L.159, I.184, Y.185 Chain G: P.78, Y.180, Q.195 6 PLIP interactions: 1 interactions with chain C, 4 interactions with chain G, 1 Ligand-Ligand interactions Hydrophobic interactions: C:I.184, G:P.78 Hydrogen bonds: G:Y.180, G:Y.180, G:Q.195 Salt bridges: H.1 HIS.2: 8 residues within 4Å: Chain D: L.159, E.181, I.184, Y.185 Chain F: Y.180, L.191, E.192, Q.195 4 PLIP interactions: 1 Ligand-Ligand interactions, 1 interactions with chain F, 2 interactions with chain D Salt bridges: H.2 Hydrogen bonds: F:Q.195, D:E.181, D:E.181 HIS.5: 10 residues within 4Å: Chain B: K.157, L.159, I.180, I.184, Y.185 Chain E: I.76, P.78, Y.180, L.191, Q.195 7 PLIP interactions: 4 interactions with chain E, 1 Ligand-Ligand interactions, 2 interactions with chain B Hydrophobic interactions: E:P.78, E:L.191 Hydrogen bonds: E:Y.180, E:Y.180, B:Y.185, B:Y.185 Salt bridges: H.5 HIS.6: 5 residues within 4Å: Chain B: N.158, E.161 Chain E: T.65, R.170, H.172 6 PLIP interactions: 4 Ligand-Ligand interactions, 1 interactions with chain E, 1 interactions with chain B Hydrogen bonds: H.6, H.6, E:T.65 Water bridges: H.6, B:N.158 Salt bridges: H.6 HIS.8: 7 residues within 4Å: Chain D: E.161 Chain F: T.65, L.68, Q.77, V.168, R.170, H.172 7 PLIP interactions: 4 interactions with chain F, 1 interactions with chain D, 2 Ligand-Ligand interactions Hydrophobic interactions: F:T.65 Hydrogen bonds: F:Q.77, F:R.170, D:E.161, H.8, H.8 Salt bridges: F:H.172 HIS.11: 5 residues within 4Å: Chain C: N.158 Chain G: T.65, Q.77, R.170, H.172 6 PLIP interactions: 4 interactions with chain G, 1 interactions with chain C, 1 Ligand-Ligand interactions Hydrophobic interactions: G:T.65 Hydrogen bonds: G:Q.77, C:N.152 Water bridges: G:Q.77 Salt bridges: G:H.172, H.11 HIS.13: 8 residues within 4Å: Chain A: K.157, I.184, Y.185 Chain H: I.76, P.78, Y.180, L.191, Q.195 4 PLIP interactions: 2 interactions with chain H, 1 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: H:L.191 Hydrogen bonds: H:Y.180, A:Y.185 Salt bridges: H.13 HIS.14: 7 residues within 4Å: Chain A: E.161 Chain H: T.65, L.68, Q.77, V.168, R.170, H.172 10 PLIP interactions: 6 interactions with chain H, 2 interactions with chain A, 2 Ligand-Ligand interactions Hydrophobic interactions: H:T.65 Hydrogen bonds: H:T.65, H:Q.77, H:R.170, H:R.170, H:H.172, A:E.161 Water bridges: A:N.158, H.14 Salt bridges: H.14

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 6 residues within 4Å: Chain E: T.149, E.150, T.151, G.152, R.153, T.154 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:E.150, E:T.151, E:T.151, E:T.151, E:G.152, E:T.154, E:T.154, E:T.154, E:T.154 PO4.4: 4 residues within 4Å: Chain E: K.108, G.131, S.132 Chain F: K.8 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:S.132 Salt bridges: E:K.108, F:K.8 PO4.7: 6 residues within 4Å: Chain F: T.149, E.150, T.151, G.152, R.153, T.154 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:T.149, F:T.149, F:E.150, F:T.151, F:G.152, F:R.153, F:T.154, F:T.154 Salt bridges: F:R.153 PO4.9: 6 residues within 4Å: Chain G: T.149, E.150, T.151, G.152, R.153, T.154 9 PLIP interactions: 9 interactions with chain G Hydrogen bonds: G:T.149, G:E.150, G:T.151, G:T.151, G:T.151, G:G.152, G:R.153, G:T.154, G:T.154 PO4.10: 4 residues within 4Å: Chain G: K.108, G.131, S.132 Chain H: R.45 6 PLIP interactions: 5 interactions with chain G, 1 interactions with chain H Hydrogen bonds: G:S.132, G:S.132 Water bridges: G:V.133, G:V.133 Salt bridges: G:K.108, H:R.45 PO4.12: 6 residues within 4Å: Chain H: T.149, E.150, T.151, G.152, R.153, T.154 8 PLIP interactions: 8 interactions with chain H Hydrogen bonds: H:E.150, H:T.151, H:T.151, H:G.152, H:R.153, H:T.154, H:T.154, H:T.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vega, M.C. et al., Regulation of the Hetero-Octameric ATP Phosphoribosyl Transferase Complex from Thermotoga Maritima by a tRNA Synthetase-Like Subunit. Mol.Microbiol. (2005)

Release Date

2004-12-15

Peptides

ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT: ABD
ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT: C
ATP PHOSPHORIBOSYLTRANSFERASE: EFG
ATP PHOSPHORIBOSYLTRANSFERASE: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
D

C
C

E
E

F
F

G
G

H
H

ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT

ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT

ATP PHOSPHORIBOSYLTRANSFERASE

ATP PHOSPHORIBOSYLTRANSFERASE