SMTL ID : 1uw1.1

A Novel ADP- and Zinc-binding fold from function-directed in vitro evolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: N.34, K.36, K.38, R.43, Y.45, N.46, M.47, C.48, F.52, Y.63, H.64, G.65, H.66 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:Y.45, A:N.46, A:M.47, A:M.47, A:G.65, A:H.66 Water bridges: A:N.34, A:K.36, A:K.36, A:R.43, A:R.43 Salt bridges: A:K.36, A:K.36, A:K.38, A:R.43, A:R.43 pi-Stacking: A:Y.45, A:F.52 ADP.3: 13 residues within 4Å: Chain B: N.34, K.36, K.38, R.43, Y.45, N.46, M.47, C.48, F.52, Y.63, H.64, G.65, H.66 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:N.46, B:M.47, B:M.47, B:G.65, B:H.66 Water bridges: B:N.34, B:K.36, B:K.36, B:R.43, B:R.43 Salt bridges: B:K.36, B:K.36, B:K.38, B:R.43, B:R.43 pi-Stacking: B:Y.45, B:F.52

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.25, C.28, C.48, C.51 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.25, A:C.28, A:C.48, A:C.51 ZN.4: 4 residues within 4Å: Chain B: C.25, C.28, C.48, C.51 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.25, B:C.28, B:C.48, B:C.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lo Surdo, P. et al., A Novel Adp- and Zinc-Binding Fold from Function-Directed in Vitro Evolution. Nat.Struct.Mol.Biol. (2004)

Release Date

2004-03-26

Peptides

ARTIFICIAL NUCLEOTIDE BINDING PROTEIN (ANBP): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ARTIFICIAL NUCLEOTIDE BINDING PROTEIN (ANBP)