- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x MN: MANGANESE (II) ION(Non-covalent)
- 6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.3: 7 residues within 4Å:- Chain A: P.276, N.277, H.339, A.341
- Chain C: E.117, P.135, S.136
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:S.136, A:H.339
- Water bridges: C:E.117, C:E.117, C:E.117
TRS.6: 7 residues within 4Å:- Chain A: E.117, P.135, S.136
- Chain B: P.276, N.277, H.339, A.341
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:S.136, B:H.339
- Water bridges: A:E.117, A:E.117, A:E.117
TRS.9: 7 residues within 4Å:- Chain B: E.117, P.135, S.136
- Chain C: P.276, N.277, H.339, A.341
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:S.136, C:H.339
- Water bridges: B:E.117, B:E.117, B:E.117
TRS.12: 7 residues within 4Å:- Chain D: P.276, N.277, H.339, A.341
- Chain F: E.117, P.135, S.136
4 PLIP interactions:3 interactions with chain F, 1 interactions with chain D- Hydrogen bonds: F:S.136, D:H.339
- Water bridges: F:E.117, F:E.117
TRS.15: 7 residues within 4Å:- Chain D: E.117, P.135, S.136
- Chain E: P.276, N.277, H.339, A.341
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain E- Hydrogen bonds: D:S.136, E:H.339
- Water bridges: D:E.117, D:E.117
TRS.18: 7 residues within 4Å:- Chain E: E.117, P.135, S.136
- Chain F: P.276, N.277, H.339, A.341
4 PLIP interactions:1 interactions with chain F, 3 interactions with chain E- Hydrogen bonds: F:H.339, E:S.136
- Water bridges: E:E.117, E:E.117
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Just, V.J. et al., A Closed Conformation of Bacillus Subtilis Oxalate Decarboxylase Oxdc Provides Evidence for the True Identity of the Active Site. J.Biol.Chem. (2004)
- Release Date
- 2004-02-19
- Peptides
- OXALATE DECARBOXYLASE OXDC: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x MN: MANGANESE (II) ION(Non-covalent)
- 6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Just, V.J. et al., A Closed Conformation of Bacillus Subtilis Oxalate Decarboxylase Oxdc Provides Evidence for the True Identity of the Active Site. J.Biol.Chem. (2004)
- Release Date
- 2004-02-19
- Peptides
- OXALATE DECARBOXYLASE OXDC: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A