SMTL ID : 1uwv.1

CRYSTAL STRUCTURE OF RUMA, THE IRON-SULFUR CLUSTER CONTAINING E. COLI 23S RIBOSOMAL RNA 5-METHYLURIDINE METHYLTRANSFERASE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 9 residues within 4Å: Chain A: C.81, C.87, G.89, C.90, Q.93, Q.161, C.162, P.163, I.164 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.81, A:C.87, A:C.90, A:C.162

2 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 2 residues within 4Å: Chain A: H.114, I.408 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.114, H2O.50, H2O.116, H2O.117 NI.3: 5 residues within 4Å: Chain A: R.132, H.191, E.193 Ligands: PO4.4, CL.5 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.191, A:E.193

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 6 residues within 4Å: Chain A: R.132, H.191, R.206, S.236 Ligands: NI.3, CL.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.132, A:R.132 Salt bridges: A:H.191, A:R.206

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: E.193 Ligands: NI.3, PO4.4 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, T.T. et al., Crystal Structure of Ruma, an Iron-Sulfur Cluster Containing E. Coli Ribosomal RNA 5-Methyluridine Methyltransferase. Structure (2004)

Release Date

2004-03-18

Peptides

23S RRNA (URACIL-5-)-METHYLTRANSFERASE RUMA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

23S RRNA (URACIL-5-)-METHYLTRANSFERASE RUMA

Related Entries With Identical Sequence