SMTL ID : 1ux6.1

Structure of a thrombospondin C-terminal fragment reveals a novel calcium core in the type 3 repeats

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

16 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.115, D.117, D.124, C.126, N.129, I.132 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.115, A:D.117, A:D.124, A:C.126, A:N.129 CA.2: 5 residues within 4Å: Chain A: D.113, D.115, D.117, V.119, D.124 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.113, A:D.115, A:D.117, A:V.119, A:D.124, H2O.3 CA.3: 4 residues within 4Å: Chain A: D.100, D.102, D.104, R.106 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.100, A:D.102, A:D.104, A:R.106, H2O.2, H2O.6 CA.4: 5 residues within 4Å: Chain A: D.77, D.79, D.81, I.83, D.88 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.77, A:D.79, A:D.81, A:I.83, A:D.88, H2O.2 CA.5: 7 residues within 4Å: Chain A: D.79, D.81, D.88, C.90, V.93, P.94, N.95 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.79, A:D.81, A:D.88, A:C.90, A:V.93 CA.6: 5 residues within 4Å: Chain A: D.66, D.68, D.75, D.77, N.80 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.66, A:D.68, A:D.75, A:D.75, H2O.8 CA.7: 5 residues within 4Å: Chain A: D.64, D.66, D.68, K.70, D.75 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.64, A:D.66, A:D.68, A:K.70, A:D.75, H2O.1 CA.8: 4 residues within 4Å: Chain A: D.72, D.75, D.78, D.85 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.72, A:D.75, A:D.85, H2O.2, H2O.7 CA.9: 7 residues within 4Å: Chain A: D.43, D.45, D.52, C.54, V.57, P.58, N.59 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.43, A:D.45, A:D.52, A:C.54, A:V.57 CA.10: 5 residues within 4Å: Chain A: D.41, D.43, D.45, H.47, D.52 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.41, A:D.43, A:D.45, A:H.47, A:D.52, H2O.1 CA.11: 4 residues within 4Å: Chain A: D.28, D.30, D.37, N.39 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.28, A:D.30, A:D.37, H2O.4, H2O.6 CA.12: 5 residues within 4Å: Chain A: D.26, D.28, D.30, I.32, D.37 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.26, A:D.28, A:D.30, A:I.32, A:D.37, H2O.1 CA.13: 5 residues within 4Å: Chain A: N.171, D.199, D.201, S.334 Ligands: CA.15 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.199, A:D.201, A:S.334, A:S.334 CA.14: 5 residues within 4Å: Chain A: E.197, R.198, D.199, Q.222, D.284 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.197, A:D.199, A:D.284, H2O.4, H2O.6 CA.15: 5 residues within 4Å: Chain A: D.199, D.200, D.201, Q.225 Ligands: CA.13 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.199, A:D.200, A:D.201, A:D.201 CA.16: 4 residues within 4Å: Chain A: D.146, G.149, D.154, D.173 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.146, A:G.149, A:D.154, A:D.173, H2O.2, H2O.4

Links

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Citation

Kvansakul, M. et al., Structure of a Thrombospondin C-Terminal Fragment Reveals a Novel Calcium Core in the Type 3 Repeats. Embo J. (2004)

Release Date

2004-03-18

Peptides

THROMBOSPONDIN-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

THROMBOSPONDIN-1