SMTL ID : 1ux7.1

Carbohydrate-Binding Module CBM36 in complex with calcium and xylotriose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x XYP- XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-1)-beta-D-xylopyranose

XYP-XYP-XYP.1: 6 residues within 4Å: Chain A: Y.15, Y.29, D.105, G.107, D.110 Ligands: CA.2 No protein-ligand interaction detected (PLIP)

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: Y.29, D.105, W.109, D.110 Ligands: XYP-XYP-XYP.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.29, A:D.105, A:W.109, A:D.110, H2O.6 CA.3: 4 residues within 4Å: Chain A: E.5, E.7, D.24, D.114 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.5, A:E.7, A:D.24, A:D.114, H2O.6

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: F.41, A.42, N.43, H.46 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.42, A:N.43, A:N.43 Water bridges: A:Q.39 Salt bridges: A:H.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jamal, S. et al., Ab Initio Structure Determination and Functional Characterization of Cbm36: A New Family of Calcium-Dependent Carbohydrate Binding Modules. Structure (2004)

Release Date

2004-10-27

Peptides

ENDO-1,4-BETA-XYLANASE D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDO-1,4-BETA-XYLANASE D