- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.2: 14 residues within 4Å:- Chain A: R.72, R.79, I.133, G.134, G.135, R.154, R.155, E.156, Y.184
- Chain B: R.440
- Chain C: P.139, D.141, W.142, W.498
15 PLIP interactions:11 interactions with chain A, 2 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: A:R.79, A:R.79, A:G.134, A:R.155, A:E.156, A:E.156, C:D.141
- Water bridges: A:R.72, A:R.154, A:R.154, C:E.501, B:R.436
- Salt bridges: A:R.72, A:R.154, B:R.440
AMP.6: 14 residues within 4Å:- Chain A: R.440
- Chain B: R.72, R.79, I.133, G.134, G.135, R.154, R.155, E.156, Y.184
- Chain D: P.139, D.141, W.142, W.498
14 PLIP interactions:10 interactions with chain B, 2 interactions with chain A, 2 interactions with chain D- Hydrogen bonds: B:R.79, B:R.79, B:G.134, B:R.155, B:E.156, D:D.141
- Water bridges: B:R.72, B:R.154, B:R.154, A:R.436, D:E.501
- Salt bridges: B:R.72, B:R.154, A:R.440
AMP.10: 14 residues within 4Å:- Chain A: P.139, D.141, W.142, W.498
- Chain C: R.72, R.79, I.133, G.134, G.135, R.154, R.155, E.156, Y.184
- Chain D: R.440
15 PLIP interactions:2 interactions with chain D, 11 interactions with chain C, 2 interactions with chain A- Water bridges: D:R.436, C:R.72, C:R.154, C:R.154, A:E.501
- Salt bridges: D:R.440, C:R.72, C:R.154
- Hydrogen bonds: C:R.79, C:R.79, C:G.134, C:R.155, C:E.156, C:E.156, A:D.141
AMP.14: 14 residues within 4Å:- Chain B: P.139, D.141, W.142, W.498
- Chain C: R.440
- Chain D: R.72, R.79, I.133, G.134, G.135, R.154, R.155, E.156, Y.184
14 PLIP interactions:9 interactions with chain D, 2 interactions with chain C, 3 interactions with chain B- Hydrogen bonds: D:R.79, D:R.79, D:G.134, D:R.155, D:E.156, B:D.141
- Water bridges: D:R.154, D:R.154, C:R.436, B:E.501, B:E.501
- Salt bridges: D:R.72, D:R.154, C:R.440
- 4 x G3H: GLYCERALDEHYDE-3-PHOSPHATE(Non-covalent)
G3H.3: 8 residues within 4Å:- Chain A: N.168, Y.169, R.296, C.297, D.298, R.454, H.455, G.456
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:N.168, A:C.297, A:D.298, A:H.455, A:H.455, A:G.456
- Water bridges: A:R.296, A:R.296, A:G.456
- Salt bridges: A:R.296
G3H.7: 8 residues within 4Å:- Chain B: N.168, Y.169, R.296, C.297, D.298, R.454, H.455, G.456
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:N.168, B:C.297, B:D.298, B:H.455, B:G.456
- Water bridges: B:R.296, B:R.296, B:G.456
- Salt bridges: B:R.296
G3H.11: 8 residues within 4Å:- Chain C: N.168, Y.169, R.296, C.297, D.298, R.454, H.455, G.456
10 PLIP interactions:10 interactions with chain C- Hydrogen bonds: C:N.168, C:C.297, C:D.298, C:H.455, C:H.455, C:G.456
- Water bridges: C:R.296, C:R.296, C:G.456
- Salt bridges: C:R.296
G3H.15: 8 residues within 4Å:- Chain D: N.168, Y.169, R.296, C.297, D.298, R.454, H.455, G.456
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:N.168, D:C.297, D:D.298, D:H.455, D:G.456
- Water bridges: D:R.296, D:R.296, D:G.456
- Salt bridges: D:R.296
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.4: 3 residues within 4Å:- Chain A: G.255, G.256
- Chain B: E.249
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.255
NA.8: 3 residues within 4Å:- Chain A: E.249
- Chain B: G.255, G.256
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Water bridges: B:D.234, A:E.249
- Hydrogen bonds: A:E.249
NA.12: 3 residues within 4Å:- Chain C: G.255, G.256
- Chain D: E.249
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:E.249
NA.16: 3 residues within 4Å:- Chain C: E.249
- Chain D: G.255, G.256
3 PLIP interactions:1 interactions with chain D, 2 interactions with chain C- Water bridges: D:D.234, C:E.249
- Hydrogen bonds: C:E.249
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lorentzen, E. et al., Structural Basis of Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde 3-Phosphate Dehydrogenase from Thermoproteus Tenax. J.Mol.Biol. (2004)
- Release Date
- 2004-08-05
- Peptides
- GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (NADP+): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 4 x G3H: GLYCERALDEHYDE-3-PHOSPHATE(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lorentzen, E. et al., Structural Basis of Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde 3-Phosphate Dehydrogenase from Thermoproteus Tenax. J.Mol.Biol. (2004)
- Release Date
- 2004-08-05
- Peptides
- GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (NADP+): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A