- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.2: 17 residues within 4Å:- Chain A: R.72, R.79, K.132, I.133, G.134, G.135, R.154, R.155, E.156, P.157, Y.184, V.479
- Chain B: R.440
- Chain C: P.139, D.141, W.142, W.498
14 PLIP interactions:7 interactions with chain A, 2 interactions with chain C, 5 interactions with chain B- Hydrogen bonds: A:R.79, A:K.132, A:G.134, A:R.155, A:E.156, C:D.141, C:W.498
- Salt bridges: A:R.72, A:R.154, B:R.440
- Water bridges: B:R.436, B:R.436, B:R.440, B:R.440
AMP.5: 17 residues within 4Å:- Chain A: R.440
- Chain B: R.72, R.79, K.132, I.133, G.134, G.135, R.154, R.155, E.156, P.157, Y.184, V.479
- Chain D: P.139, D.141, W.142, W.498
13 PLIP interactions:6 interactions with chain B, 5 interactions with chain A, 2 interactions with chain D- Hydrogen bonds: B:R.79, B:K.132, B:G.134, B:R.155, D:D.141, D:W.498
- Salt bridges: B:R.72, B:R.154, A:R.440
- Water bridges: A:R.436, A:R.436, A:R.440, A:R.440
AMP.8: 17 residues within 4Å:- Chain A: P.139, D.141, W.142, W.498
- Chain C: R.72, R.79, K.132, I.133, G.134, G.135, R.154, R.155, E.156, P.157, Y.184, V.479
- Chain D: R.440
14 PLIP interactions:7 interactions with chain C, 5 interactions with chain D, 2 interactions with chain A- Hydrogen bonds: C:R.79, C:K.132, C:G.134, C:R.155, C:E.156, A:D.141, A:W.498
- Salt bridges: C:R.72, C:R.154, D:R.440
- Water bridges: D:R.436, D:R.436, D:R.440, D:R.440
AMP.11: 17 residues within 4Å:- Chain B: P.139, D.141, W.142, W.498
- Chain C: R.440
- Chain D: R.72, R.79, K.132, I.133, G.134, G.135, R.154, R.155, E.156, P.157, Y.184, V.479
13 PLIP interactions:6 interactions with chain D, 5 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: D:R.79, D:K.132, D:G.134, D:R.155, B:D.141, B:W.498
- Salt bridges: D:R.72, D:R.154, C:R.440
- Water bridges: C:R.436, C:R.436, C:R.440, C:R.440
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.3: 4 residues within 4Å:- Chain A: D.234, G.255, G.256
- Chain B: E.249
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:E.249
- Water bridges: B:K.253, B:K.253, A:V.257
NA.6: 4 residues within 4Å:- Chain A: E.249
- Chain B: D.234, G.255, G.256
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:G.255
- Water bridges: B:D.234, B:V.257, A:E.249, A:K.253
NA.9: 4 residues within 4Å:- Chain C: D.234, G.255, G.256
- Chain D: E.249
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:E.249
- Water bridges: D:K.253, D:K.253, C:V.257
NA.12: 4 residues within 4Å:- Chain C: E.249
- Chain D: D.234, G.255, G.256
5 PLIP interactions:2 interactions with chain D, 3 interactions with chain C- Water bridges: D:D.234, D:V.257, C:E.249, C:K.253
- Hydrogen bonds: C:E.249
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lorentzen, E. et al., Structural Basis of Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde 3-Phosphate Dehydrogenase from Thermoproteus Tenax. J.Mol.Biol. (2004)
- Release Date
- 2004-08-05
- Peptides
- GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (NADP+): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lorentzen, E. et al., Structural Basis of Allosteric Regulation and Substrate Specificity of the Non-Phosphorylating Glyceraldehyde 3-Phosphate Dehydrogenase from Thermoproteus Tenax. J.Mol.Biol. (2004)
- Release Date
- 2004-08-05
- Peptides
- GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (NADP+): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A