SMTL ID : 1uzg.1

CRYSTAL STRUCTURE OF THE DENGUE TYPE 3 VIRUS ENVELOPE PROTEIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

homo-dimer

Ligands

1 x NAG- FUL: beta-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUL.1: 3 residues within 4Å: Chain A: N.67, Y.90, K.118 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.118

1 x NAG- NAG- BMA- BMA- BMA- FUL: beta-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA-BMA-FUL.2: 4 residues within 4Å: Chain A: D.147, H.149, N.153, T.155 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.149

1 x NAG- NAG- MAN- FUL: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-FUL.3: 4 residues within 4Å: Chain A: G.102 Chain B: D.147, H.149, N.153 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.147

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain B: N.67, Y.90, K.118 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.90, B:K.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Modis, Y. et al., Variable Surface Epitopes in the Crystal Structure of Dengue Virus Type 3 Envelope Glycoprotein. J.Virol. (2005)

Release Date

2005-03-15

Peptides

MAJOR ENVELOPE PROTEIN E: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MAJOR ENVELOPE PROTEIN E