SMTL ID : 1uzz.1 (1 other biounit)

Erythrina cristagalli bound to N-linked oligosaccharide and lactose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: D.89, Y.106, G.107, F.131, N.133, G.217, A.218 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.89, A:G.107, A:N.133, A:A.218, A:Q.219 GOL.4: 8 residues within 4Å: Chain B: D.89, Y.106, G.107, F.131, N.133, T.216, G.217, A.218 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.107, B:N.133, B:N.133, B:A.218 Water bridges: B:Q.219, B:Q.219

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.129, F.131, N.133, D.136 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.129, A:F.131, A:D.136, H2O.5, H2O.6 CA.5: 4 residues within 4Å: Chain B: D.129, F.131, N.133, D.136 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.129, B:F.131, B:D.136, H2O.15, H2O.15

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 4 residues within 4Å: Chain A: E.127, D.129, D.136, H.142 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.127, A:D.129, A:D.136, A:H.142, H2O.10, H2O.10 MN.6: 4 residues within 4Å: Chain B: E.127, D.129, D.136, H.142 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.127, B:D.129, B:D.136, B:H.142, H2O.19, H2O.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Turton, K. et al., Crystal structures of Erythrina cristagalli lectin with bound N-linked oligosaccharide and lactose. Glycobiology (2004)

Release Date

2004-06-22

Peptides

Lectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lectin

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