SMTL ID : 1v08.1

Crystal structure of the Zea maze beta-glucosidase-1 in complex with gluco-tetrazole

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

4 x NTZ: NOJIRIMYCINE TETRAZOLE(Non-covalent)

NTZ.1: 13 residues within 4Å: Chain A: Q.38, H.142, W.143, N.190, D.191, Y.333, W.378, E.406, W.457, E.464, W.465, Y.473 Ligands: NTZ.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.38, A:H.142, A:N.190, A:D.191, A:Y.333, A:W.465, A:Y.473 Water bridges: A:N.462, A:Y.473 NTZ.2: 11 residues within 4Å: Chain A: W.143, D.191, T.194, F.198, F.205, M.263, W.378, E.464, W.465, F.466 Ligands: NTZ.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.191, A:T.194 pi-Stacking: A:F.198, A:W.378, A:W.378 NTZ.3: 12 residues within 4Å: Chain B: Q.38, H.142, N.190, D.191, Y.333, W.378, E.406, W.457, E.464, W.465, Y.473 Ligands: NTZ.4 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:Q.38, B:H.142, B:N.190, B:D.191, B:Y.333, B:W.465, B:Y.473 Water bridges: B:S.458, B:E.464 NTZ.4: 8 residues within 4Å: Chain B: D.191, T.194, F.198, F.205, M.263, W.378, E.464 Ligands: NTZ.3 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:T.194, B:E.464 Water bridges: B:D.261, B:E.464, B:F.466 pi-Stacking: B:F.198, B:W.378, B:W.378

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verdoucq, L. et al., Structural Determinants of Substrate Specificity in Family 1 Beta-Glucosidases: Novel Insights from the Crystal Structure of Sorghum Dhurrinase-1, a Plant Beta-Glucosidase with Strict Specificity, in Complex with its Natural Substrate. J.Biol.Chem. (2004)

Release Date

2004-05-20

Peptides

BETA-GLUCOSIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

BETA-GLUCOSIDASE

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