SMTL ID : 1v0d.1

Crystal Structure of Caspase-activated DNase (CAD)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.229, C.238, H.242, C.307 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.229, A:C.238, A:H.242, A:C.307 ZN.4: 4 residues within 4Å: Chain B: C.229, C.238, H.242, C.307 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.229, B:C.238, B:H.242, B:C.307

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.262, H.308 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.262, A:H.308, H2O.1 MG.5: 2 residues within 4Å: Chain B: D.262, H.308 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.262, B:H.308, H2O.2

2 x PB: LEAD (II) ION(Non-covalent)

PB.3: 2 residues within 4Å: Chain A: C.197, K.201 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.197 PB.6: 2 residues within 4Å: Chain B: C.197, K.201 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Woo, E.-J. et al., Structural Mechanism for Inactivation and Activation of Cad/Dff40 in the Apoptotic Pathway. Mol.Cell (2004)

Release Date

2004-05-21

Peptides

DNA FRAGMENTATION FACTOR 40 KDA SUBUNIT: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

DNA FRAGMENTATION FACTOR 40 KDA SUBUNIT