SMTL ID : 1v0n.1

Xylanase Xyn10a from Streptomyces lividans in complex with xylobio-isofagomine at pH 7.5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: S.12, G.13, R.14, S.258, C.260, L.261 No protein-ligand interaction detected (PLIP) EDO.2: 5 residues within 4Å: Chain A: H.86, Q.89, Q.94, S.141, N.142 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.142, A:R.145 Water bridges: A:Q.94, A:Q.94, A:D.140, A:D.140, A:R.145, A:R.145

1 x XIF: PIPERIDINE-3,4-DIOL(Non-covalent)

XIF.3: 12 residues within 4Å: Chain A: K.48, H.81, W.85, N.127, E.128, Q.205, H.207, E.236, W.266, W.274 Ligands: XYP.4, IMD.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.274 Hydrogen bonds: A:K.48, A:H.81, A:Q.205, A:E.236

1 x XYP: beta-D-xylopyranose(Non-covalent)

XYP.4: 7 residues within 4Å: Chain A: E.44, N.45, K.48, Q.88, W.266, W.274 Ligands: XIF.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.44, A:N.45, A:K.48, A:W.266 Water bridges: A:N.45, A:W.274

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.5: 7 residues within 4Å: Chain A: E.128, Y.172, Q.205, H.207, W.274, R.275 Ligands: XIF.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.275 pi-Stacking: A:Y.172, A:W.274

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gloster, T.M. et al., Atomic Resolution Analyses of the Binding of Xylobiose-Derived Deoxynojirimycin and Isofagomine to Xylanase Xyn10A. Chem.Commun.(Camb.) (2004)

Release Date

2004-08-16

Peptides

ENDO-1,4-BETA-XYLANASE A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDO-1,4-BETA-XYLANASE A

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