- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.84 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.7: 5 residues within 4Å:- Chain A: D.213, G.217, D.244, P.267, G.268
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.213, A:G.217, A:D.244, A:P.267, H2O.5
CA.16: 4 residues within 4Å:- Chain B: D.213, G.217, D.244, P.267
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.213, B:G.217, B:D.244, B:P.267, H2O.23, H2O.24
CA.23: 4 residues within 4Å:- Chain C: D.213, G.217, D.244, P.267
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.213, C:G.217, C:D.244, C:P.267, H2O.38
CA.29: 5 residues within 4Å:- Chain D: D.213, G.217, D.244, P.267, G.268
6 PLIP interactions:4 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.213, D:G.217, D:D.244, D:P.267, H2O.55, H2O.57
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.8: 6 residues within 4Å:- Chain A: Q.55, H.63, N.65, S.72, F.74
- Chain C: R.26
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:Q.55, A:N.65, A:S.72, C:R.26, C:R.26
- Water bridges: A:Q.55
GOL.17: 8 residues within 4Å:- Chain A: R.26
- Chain B: Q.55, H.63, N.65, T.67, S.72, F.74, R.75
7 PLIP interactions:5 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:Q.55, B:Q.55, B:N.65, B:S.72, A:R.26, A:R.26
- Water bridges: B:H.69
GOL.25: 7 residues within 4Å:- Chain C: Q.55, H.63, N.65, S.72, F.74, R.75
- Chain D: R.26
6 PLIP interactions:4 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:Q.55, C:N.65, C:S.72, D:R.26, D:R.26
- Water bridges: C:Q.55
GOL.30: 7 residues within 4Å:- Chain B: R.26
- Chain D: Q.55, H.63, N.65, S.72, F.74, R.75
6 PLIP interactions:2 interactions with chain B, 4 interactions with chain D- Hydrogen bonds: B:R.26, B:R.26, D:Q.55, D:N.65, D:S.72
- Water bridges: D:Q.55
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)(Non-functional Binders)
NAG.9: 4 residues within 4Å:- Chain A: N.65, L.358
- Chain C: Y.387
- Ligands: NAG.22
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.358
- Hydrogen bonds: A:N.65
NAG.10: 6 residues within 4Å:- Chain A: R.373, L.374, G.375
- Chain B: N.119, N.120
- Ligands: NAG-BMA-MAN-MAN.2
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:L.374, B:N.119, B:N.120
NAG.13: 1 residues within 4Å:- Ligands: NAG.19
No protein-ligand interaction detected (PLIP)NAG.18: 3 residues within 4Å:- Chain B: T.2, N.5, K.154
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.5
- Water bridges: B:R.1
NAG.19: 4 residues within 4Å:- Chain A: Y.387
- Chain B: N.65, L.358
- Ligands: NAG.13
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:L.358
- Hydrogen bonds: B:N.65
NAG.22: 1 residues within 4Å:- Ligands: NAG.9
No protein-ligand interaction detected (PLIP)NAG.26: 3 residues within 4Å:- Chain C: T.2, F.3, N.5
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:T.2, C:T.2, C:N.5
NAG.27: 4 residues within 4Å:- Chain C: N.65, L.358
- Chain D: Y.387
- Ligands: NAG.28
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:L.358
- Hydrogen bonds: C:N.65
NAG.28: 2 residues within 4Å:- Chain D: I.386
- Ligands: NAG.27
No protein-ligand interaction detected (PLIP)NAG.31: 4 residues within 4Å:- Chain D: F.3, N.5, T.7, K.154
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:T.7
- Hydrogen bonds: D:N.5
- Water bridges: D:F.3
NAG.32: 3 residues within 4Å:- Chain B: Y.387
- Chain D: N.65, L.358
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:L.358
- Hydrogen bonds: D:N.65
NAG.33: 5 residues within 4Å:- Chain B: L.374, G.375, S.376
- Chain D: N.120
- Ligands: NAG-BMA-MAN.4
7 PLIP interactions:2 interactions with chain B, 5 interactions with chain D- Hydrogen bonds: B:S.376
- Water bridges: B:S.376, D:N.119, D:N.119, D:N.120, D:N.120, D:N.120
- 7 x MAN: alpha-D-mannopyranose(Non-covalent)
MAN.11: 4 residues within 4Å:- Chain A: D.250, R.284, P.310
- Ligands: NAG-BMA-MAN-MAN.2
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:D.250, A:R.284, A:R.284
- Water bridges: A:D.250, A:R.284, A:K.288
MAN.12: 5 residues within 4Å:- Chain A: E.295, L.297, N.313, V.315
- Ligands: NAG-BMA-MAN-MAN.2
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.295, A:N.313
MAN.14: 4 residues within 4Å:- Chain C: D.250, R.284, P.310
- Ligands: NAG-NAG-BMA-MAN-MAN-MAN.3
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.284
- Water bridges: C:D.250, C:E.295
MAN.15: 5 residues within 4Å:- Chain C: E.295, L.297, N.313, V.315
- Ligands: NAG-NAG-BMA-MAN-MAN-MAN.3
1 PLIP interactions:1 interactions with chain C- Water bridges: C:N.313
MAN.20: 3 residues within 4Å:- Chain B: D.250, R.284
- Ligands: NAG-BMA-MAN.4
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:D.250, B:D.250, B:R.284, B:R.284
- Water bridges: B:D.250, B:D.250
MAN.21: 4 residues within 4Å:- Chain B: E.295, N.313, V.315
- Ligands: NAG-BMA-MAN.4
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.295, B:N.313
MAN.34: 4 residues within 4Å:- Chain D: I.286, E.295, V.315
- Ligands: BMA-MAN.6
4 PLIP interactions:4 interactions with chain D- Water bridges: D:R.284, D:N.313, D:N.319, D:Q.320
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rudino-Pinera, E. et al., The Crystal Structure of Influenza Type a Virus Neuraminidase of the N6 Subtype at 1.85 A Resolution. To be Published
- Release Date
- 2006-01-25
- Peptides
- NEURAMINIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.84 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)(Non-functional Binders)
- 7 x MAN: alpha-D-mannopyranose(Non-covalent)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rudino-Pinera, E. et al., The Crystal Structure of Influenza Type a Virus Neuraminidase of the N6 Subtype at 1.85 A Resolution. To be Published
- Release Date
- 2006-01-25
- Peptides
- NEURAMINIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D