- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 4 residues within 4Å:- Chain A: E.193, N.222, Y.224
- Ligands: TPP.7
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.193, A:E.193, A:Y.224, H2O.12
MN.14: 4 residues within 4Å:- Chain C: E.193, N.222, Y.224
- Ligands: TPP.19
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.193, C:E.193, C:Y.224, H2O.34
- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 4 residues within 4Å:- Chain B: Y.102, H.146
- Chain C: Y.113
- Ligands: TPP.19
Ligand excluded by PLIPCL.4: 2 residues within 4Å:- Chain B: W.330
- Chain C: H.392
Ligand excluded by PLIPCL.5: 1 residues within 4Å:- Chain B: R.55
Ligand excluded by PLIPCL.6: 2 residues within 4Å:- Chain A: E.76
- Ligands: BEN.8
Ligand excluded by PLIPCL.15: 4 residues within 4Å:- Chain A: Y.113
- Chain D: Y.102, H.146
- Ligands: TPP.7
Ligand excluded by PLIPCL.16: 2 residues within 4Å:- Chain A: H.392
- Chain D: W.330
Ligand excluded by PLIPCL.17: 1 residues within 4Å:- Chain D: R.55
Ligand excluded by PLIPCL.18: 2 residues within 4Å:- Chain C: E.76
- Ligands: BEN.20
Ligand excluded by PLIP- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
TPP.7: 21 residues within 4Å:- Chain A: R.114, S.162, P.163, L.164, G.192, E.193, G.194, A.195, E.198, R.220, N.222, Y.224, A.225, I.226
- Chain D: E.46, L.74, E.76, Q.98, Y.102
- Ligands: MN.2, CL.15
19 PLIP interactions:17 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: A:A.225, A:I.226, A:I.226, D:Y.102
- Hydrogen bonds: A:S.162, A:G.192, A:E.193, A:G.194, A:A.195
- Water bridges: A:R.114, A:R.114, A:R.220, A:R.220, A:R.220, A:R.220, A:R.287
- Salt bridges: A:R.114, A:R.220
- pi-Stacking: D:Y.102
TPP.19: 21 residues within 4Å:- Chain B: E.46, L.74, E.76, Q.98, Y.102
- Chain C: R.114, S.162, P.163, L.164, G.192, E.193, G.194, A.195, E.198, R.220, N.222, Y.224, A.225, I.226
- Ligands: CL.3, MN.14
23 PLIP interactions:21 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: C:A.225, C:I.226, C:I.226, B:Y.102
- Hydrogen bonds: C:S.162, C:L.164, C:G.192, C:E.193, C:G.194, C:A.195, C:E.198, C:N.222, C:Y.224
- Water bridges: C:R.114, C:R.114, C:R.220, C:R.220, C:R.220, C:R.220, C:R.287
- Salt bridges: C:R.114, C:R.220
- pi-Stacking: B:Y.102
- 2 x BEN: BENZAMIDINE(Non-functional Binders)
BEN.8: 8 residues within 4Å:- Chain A: I.73, E.76, S.77, Q.80, R.82, M.346, F.349
- Ligands: CL.6
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:I.73, A:Q.80
- Water bridges: A:Q.80
BEN.20: 8 residues within 4Å:- Chain C: I.73, E.76, S.77, Q.80, R.82, M.346, F.349
- Ligands: CL.18
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:I.73, C:Q.80
- Water bridges: C:Q.80
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 8 residues within 4Å:- Chain A: Q.374
- Chain B: W.260, E.290, T.294, E.297
- Chain D: L.283, T.284, R.309
9 PLIP interactions:2 interactions with chain A, 4 interactions with chain B, 3 interactions with chain D- Water bridges: A:Q.374, A:Q.378, B:W.260, B:E.297, D:T.284
- Hydrogen bonds: B:E.290, B:E.297, D:T.284, D:R.309
GOL.11: 5 residues within 4Å:- Chain A: K.153, R.185
- Chain B: V.88, T.89, F.125
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:V.88, A:R.185, A:R.185
- Water bridges: A:H.156
GOL.12: 6 residues within 4Å:- Chain B: L.283, R.309, V.310, C.311, Y.313
- Chain C: S.381
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:R.309, B:C.311, C:S.381, C:S.381
- Water bridges: B:C.311, B:Y.313
GOL.22: 8 residues within 4Å:- Chain B: L.283, T.284, R.309
- Chain C: Q.374
- Chain D: W.260, E.290, T.294, E.297
9 PLIP interactions:3 interactions with chain D, 4 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: D:T.294, D:E.297, B:T.284, B:T.284, B:R.309
- Water bridges: D:W.260, B:T.284, C:Q.374, C:Q.378
GOL.23: 5 residues within 4Å:- Chain C: K.153, R.185
- Chain D: V.88, T.89, F.125
3 PLIP interactions:1 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:V.88, C:R.185, C:R.185
GOL.24: 6 residues within 4Å:- Chain A: S.381
- Chain D: L.283, R.309, V.310, C.311, Y.313
6 PLIP interactions:4 interactions with chain D, 2 interactions with chain A- Hydrogen bonds: D:R.309, D:C.311, A:S.381, A:S.381
- Water bridges: D:C.311, D:Y.313
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Li, J. et al., Cross-Talk between Thiamin Diphosphate Binding and Phosphorylation Loop Conformation in Human Branched-Chain {Alpha}-Keto Acid Decarboxylase/Dehydrogenase. J.Biol.Chem. (2004)
- Release Date
- 2004-06-03
- Peptides
- 2-OXOISOVALERATE DEHYDROGENASE ALPHA SUBUNIT: AC
2-OXOISOVALERATE DEHYDROGENASE BETA SUBUNIT: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- 2 x BEN: BENZAMIDINE(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Li, J. et al., Cross-Talk between Thiamin Diphosphate Binding and Phosphorylation Loop Conformation in Human Branched-Chain {Alpha}-Keto Acid Decarboxylase/Dehydrogenase. J.Biol.Chem. (2004)
- Release Date
- 2004-06-03
- Peptides
- 2-OXOISOVALERATE DEHYDROGENASE ALPHA SUBUNIT: AC
2-OXOISOVALERATE DEHYDROGENASE BETA SUBUNIT: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B