- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x K: POTASSIUM ION(Non-covalent)
K.2: 5 residues within 4Å:- Chain A: Q.112, S.161, P.163, T.166, Q.167
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:S.161, A:S.161, A:P.163, H2O.4
K.8: 7 residues within 4Å:- Chain B: G.128, L.130, T.131, C.178, I.179, D.181, N.183
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:L.130, B:C.178, B:D.181, B:N.183, H2O.17
K.12: 5 residues within 4Å:- Chain C: Q.112, S.161, P.163, T.166, Q.167
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:S.161, C:S.161, C:P.163, H2O.24
K.18: 7 residues within 4Å:- Chain D: G.128, L.130, T.131, C.178, I.179, D.181, N.183
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:L.130, D:C.178, D:D.181, D:N.183, H2O.37
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.3: 3 residues within 4Å:- Chain A: E.193, N.222
- Ligands: SO4.6
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.222, A:N.222
NA.4: 5 residues within 4Å:- Chain A: Q.112, F.191, G.192, A.195, R.220
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.192, A:R.220
- Water bridges: A:Q.112, A:Q.167
NA.13: 3 residues within 4Å:- Chain C: E.193, N.222
- Ligands: SO4.16
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.222, C:N.222
NA.14: 5 residues within 4Å:- Chain C: Q.112, F.191, G.192, A.195, R.220
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:G.192, C:R.220
- Water bridges: C:Q.112, C:Q.167
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 4 residues within 4Å:- Chain A: R.114, R.220, N.222
- Ligands: NA.3
6 PLIP interactions:6 interactions with chain A- Water bridges: A:R.114, A:E.193, A:R.220, A:R.220
- Salt bridges: A:R.114, A:R.220
SO4.16: 4 residues within 4Å:- Chain C: R.114, R.220, N.222
- Ligands: NA.13
6 PLIP interactions:6 interactions with chain C- Water bridges: C:R.114, C:E.193, C:R.220, C:R.220
- Salt bridges: C:R.114, C:R.220
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 8 residues within 4Å:- Chain A: Q.374
- Chain B: W.260, E.290, T.294, E.297
- Chain D: L.283, T.284, R.309
8 PLIP interactions:4 interactions with chain D, 4 interactions with chain B- Hydrogen bonds: D:T.284, D:R.309, B:E.290, B:E.297
- Water bridges: D:T.284, D:D.314, B:W.260, B:E.297
GOL.10: 5 residues within 4Å:- Chain B: L.283, R.309, V.310, C.311, Y.313
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.309, B:C.311
- Water bridges: B:C.311, B:Y.313
GOL.19: 8 residues within 4Å:- Chain B: L.283, T.284, R.309
- Chain C: Q.374
- Chain D: W.260, E.290, T.294, E.297
8 PLIP interactions:4 interactions with chain B, 1 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: B:T.284, B:T.284, B:R.309, D:T.294, D:E.297
- Water bridges: B:T.284, C:Q.378, D:W.260
GOL.20: 5 residues within 4Å:- Chain D: L.283, R.309, V.310, C.311, Y.313
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:R.309, D:C.311
- Water bridges: D:C.311, D:Y.313
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Li, J. et al., Cross-Talk between Thiamin Diphosphate Binding and Phosphorylation Loop Conformation in Human Branched-Chain {Alpha}-Keto Acid Decarboxylase/Dehydrogenase. J.Biol.Chem. (2004)
- Release Date
- 2004-06-03
- Peptides
- 2-OXOISOVALERATE DEHYDROGENASE ALPHA SUBUNIT: AC
2-OXOISOVALERATE DEHYDROGENASE BETA SUBUNIT: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x K: POTASSIUM ION(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Li, J. et al., Cross-Talk between Thiamin Diphosphate Binding and Phosphorylation Loop Conformation in Human Branched-Chain {Alpha}-Keto Acid Decarboxylase/Dehydrogenase. J.Biol.Chem. (2004)
- Release Date
- 2004-06-03
- Peptides
- 2-OXOISOVALERATE DEHYDROGENASE ALPHA SUBUNIT: AC
2-OXOISOVALERATE DEHYDROGENASE BETA SUBUNIT: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B