SMTL ID : 1v25.1

Crystal structure of tt0168 from Thermus thermophilus HB8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.184, L.326, E.328 Ligands: ANP.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.184, A:E.328, H2O.119 MG.2: 3 residues within 4Å: Chain B: T.184, E.328 Ligands: ANP.4 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:T.184, B:E.328

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.3: 21 residues within 4Å: Chain A: T.184, F.229, H.230, V.231, W.234, G.302, S.303, A.304, Q.322, G.323, Y.324, G.325, L.326, T.327, D.418, I.430, R.433, K.435, K.439, W.444 Ligands: MG.1 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:T.184, A:H.230, A:V.231, A:W.234, A:G.302, A:Q.322, A:G.323, A:G.325, A:T.327, A:T.327, A:T.327, A:T.327, A:T.327, A:D.418, A:K.435, A:K.439 Water bridges: A:G.186, A:A.304 Salt bridges: A:K.439 pi-Stacking: A:Y.324 ANP.4: 20 residues within 4Å: Chain B: F.229, H.230, V.231, W.234, G.302, S.303, A.304, Q.322, G.323, Y.324, G.325, L.326, T.327, D.418, I.430, R.433, K.435, K.439, W.444 Ligands: MG.2 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:T.184, B:V.231, B:W.234, B:G.302, B:Q.322, B:G.323, B:G.325, B:T.327, B:T.327, B:T.327, B:T.327, B:D.418, B:K.435, B:K.439 Water bridges: B:N.103, B:N.103, B:G.186, B:A.304, B:T.327, B:R.433 Salt bridges: B:K.439 pi-Stacking: B:Y.324

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hisanaga, Y. et al., Structural Basis of the Substrate-specific Two-step Catalysis of Long Chain Fatty Acyl-CoA Synthetase Dimer. J.Biol.Chem. (2004)

Release Date

2004-07-27

Peptides

long-chain-fatty-acid-CoA synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

long-chain-fatty-acid-CoA synthetase

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