SMTL ID : 1v34.1

Crystal structure of Pyrococcus horikoshii DNA primase-UTP complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.126, H.128, C.134, C.137 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.126, A:H.128, A:C.134, A:C.137

1 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)

UTP.2: 11 residues within 4Å: Chain A: R.69, D.117, K.119, S.166, G.167, R.168, H.171, R.309, I.310, R.312, H.318 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:R.69, A:D.117, A:D.117, A:S.166, A:S.166, A:R.168, A:R.309, A:I.310 Water bridges: A:R.69, A:H.171 Salt bridges: A:K.119, A:K.119, A:K.119, A:R.168, A:R.168, A:H.171, A:R.312, A:R.312, A:H.318, A:H.318

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ito, N. et al., Crystal structure of the Pyrococcus horikoshii DNA primase-UTP complex: implications for the mechanism of primer synthesis. Genes Cells (2003)

Release Date

2004-03-23

Peptides

DNA primase small subunit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA primase small subunit

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