- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.3: 2 residues within 4Å:- Chain A: T.161, N.167
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:T.161
- Hydrogen bonds: A:N.167
NAG.8: 5 residues within 4Å:- Chain B: T.161, R.162, N.166, N.167, I.250
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:T.161, B:I.250
- Water bridges: B:R.162, B:N.167, B:N.167
NAG.9: 4 residues within 4Å:- Chain B: L.381, N.382, R.383, T.384
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:N.382
- Hydrogen bonds: B:N.382, B:T.384
NAG.16: 2 residues within 4Å:- Chain C: T.161, N.167
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:T.161
- Hydrogen bonds: C:N.167
NAG.21: 5 residues within 4Å:- Chain D: T.161, R.162, N.166, N.167, I.250
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:T.161, D:I.250
- Water bridges: D:R.162, D:N.167, D:N.167
NAG.22: 4 residues within 4Å:- Chain D: L.381, N.382, R.383, T.384
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:N.382
- Hydrogen bonds: D:N.382, D:T.384
NAG.29: 2 residues within 4Å:- Chain E: T.161, N.167
2 PLIP interactions:2 interactions with chain E- Hydrophobic interactions: E:T.161
- Hydrogen bonds: E:N.167
NAG.34: 5 residues within 4Å:- Chain F: T.161, R.162, N.166, N.167, I.250
5 PLIP interactions:5 interactions with chain F- Hydrophobic interactions: F:T.161, F:I.250
- Water bridges: F:R.162, F:N.167, F:N.167
NAG.35: 4 residues within 4Å:- Chain F: L.381, N.382, R.383, T.384
2 PLIP interactions:2 interactions with chain F- Hydrophobic interactions: F:N.382
- Hydrogen bonds: F:N.382
NAG.42: 2 residues within 4Å:- Chain G: T.161, N.167
2 PLIP interactions:2 interactions with chain G- Hydrophobic interactions: G:T.161
- Hydrogen bonds: G:N.167
NAG.47: 5 residues within 4Å:- Chain H: T.161, R.162, N.166, N.167, I.250
5 PLIP interactions:5 interactions with chain H- Hydrophobic interactions: H:T.161, H:I.250
- Water bridges: H:R.162, H:N.167, H:N.167
NAG.48: 4 residues within 4Å:- Chain H: L.381, N.382, R.383, T.384
2 PLIP interactions:2 interactions with chain H- Hydrophobic interactions: H:N.382
- Hydrogen bonds: H:N.382
- 8 x SLB: N-acetyl-beta-neuraminic acid(Non-covalent)
SLB.4: 10 residues within 4Å:- Chain A: R.51, E.135, Y.178, Y.196, F.231, E.268, R.283, R.361, Y.389
- Ligands: SO4.7
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:Y.178
- Hydrogen bonds: A:Y.196, A:Y.196, A:E.268, A:R.283
- Water bridges: A:R.51, A:E.135, A:E.135, A:E.135, A:E.135, A:R.283, A:R.283, A:R.361
- Salt bridges: A:R.51, A:R.283, A:R.361
SLB.10: 8 residues within 4Å:- Chain B: R.51, E.135, Y.178, Y.196, E.268, R.283, R.361, Y.389
19 PLIP interactions:19 interactions with chain B- Hydrophobic interactions: B:Y.178
- Hydrogen bonds: B:E.135, B:Y.196, B:Y.196, B:E.268, B:R.283, B:Y.389
- Water bridges: B:R.51, B:R.51, B:Y.139, B:E.268, B:R.283, B:R.283, B:R.283, B:R.361, B:R.361
- Salt bridges: B:R.51, B:R.283, B:R.361
SLB.17: 10 residues within 4Å:- Chain C: R.51, E.135, Y.178, Y.196, F.231, E.268, R.283, R.361, Y.389
- Ligands: SO4.20
16 PLIP interactions:16 interactions with chain C- Hydrophobic interactions: C:Y.178
- Hydrogen bonds: C:Y.196, C:Y.196, C:E.268, C:R.283
- Water bridges: C:R.51, C:E.135, C:E.135, C:E.135, C:E.135, C:R.283, C:R.283, C:R.361
- Salt bridges: C:R.51, C:R.283, C:R.361
SLB.23: 8 residues within 4Å:- Chain D: R.51, E.135, Y.178, Y.196, E.268, R.283, R.361, Y.389
19 PLIP interactions:19 interactions with chain D- Hydrophobic interactions: D:Y.178
- Hydrogen bonds: D:E.135, D:Y.196, D:Y.196, D:E.268, D:R.283, D:Y.389
- Water bridges: D:R.51, D:R.51, D:Y.139, D:E.268, D:R.283, D:R.283, D:R.283, D:R.361, D:R.361
- Salt bridges: D:R.51, D:R.283, D:R.361
SLB.30: 10 residues within 4Å:- Chain E: R.51, E.135, Y.178, Y.196, F.231, E.268, R.283, R.361, Y.389
- Ligands: SO4.33
18 PLIP interactions:18 interactions with chain E- Hydrophobic interactions: E:Y.178
- Hydrogen bonds: E:Y.196, E:Y.196, E:E.268, E:R.283, E:Y.389
- Water bridges: E:R.51, E:E.135, E:E.135, E:Y.139, E:R.283, E:R.283, E:T.285, E:T.285, E:R.361
- Salt bridges: E:R.51, E:R.283, E:R.361
SLB.36: 8 residues within 4Å:- Chain F: R.51, E.135, Y.178, Y.196, E.268, R.283, R.361, Y.389
22 PLIP interactions:22 interactions with chain F- Hydrophobic interactions: F:Y.178
- Hydrogen bonds: F:E.135, F:Y.196, F:Y.196, F:E.268, F:E.268, F:R.283
- Water bridges: F:R.51, F:R.51, F:E.135, F:E.135, F:E.268, F:R.283, F:R.283, F:R.283, F:T.285, F:T.285, F:R.361, F:R.361
- Salt bridges: F:R.51, F:R.283, F:R.361
SLB.43: 10 residues within 4Å:- Chain G: R.51, E.135, Y.178, Y.196, F.231, E.268, R.283, R.361, Y.389
- Ligands: SO4.46
18 PLIP interactions:18 interactions with chain G- Hydrophobic interactions: G:Y.178
- Hydrogen bonds: G:Y.196, G:Y.196, G:E.268, G:R.283, G:Y.389
- Water bridges: G:R.51, G:E.135, G:E.135, G:Y.139, G:R.283, G:R.283, G:T.285, G:T.285, G:R.361
- Salt bridges: G:R.51, G:R.283, G:R.361
SLB.49: 8 residues within 4Å:- Chain H: R.51, E.135, Y.178, Y.196, E.268, R.283, R.361, Y.389
22 PLIP interactions:22 interactions with chain H- Hydrophobic interactions: H:Y.178
- Hydrogen bonds: H:E.135, H:Y.196, H:Y.196, H:E.268, H:E.268, H:R.283
- Water bridges: H:R.51, H:R.51, H:E.135, H:E.135, H:E.268, H:R.283, H:R.283, H:R.283, H:T.285, H:T.285, H:R.361, H:R.361
- Salt bridges: H:R.51, H:R.283, H:R.361
- 8 x CA: CALCIUM ION(Non-covalent)
CA.5: 4 residues within 4Å:- Chain A: D.138, S.141, G.143, A.175
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.138, A:D.138, A:S.141, A:S.141, A:G.143
CA.11: 5 residues within 4Å:- Chain B: D.138, S.141, P.142, G.143, A.175
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.138, B:D.138, B:S.141, B:G.143, H2O.18
CA.18: 4 residues within 4Å:- Chain C: D.138, S.141, G.143, A.175
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.138, C:D.138, C:S.141, C:S.141, C:G.143
CA.24: 5 residues within 4Å:- Chain D: D.138, S.141, P.142, G.143, A.175
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.138, D:D.138, D:S.141, D:G.143, H2O.50
CA.31: 4 residues within 4Å:- Chain E: D.138, S.141, G.143, A.175
5 PLIP interactions:5 interactions with chain E- Metal complexes: E:D.138, E:D.138, E:S.141, E:S.141, E:G.143
CA.37: 5 residues within 4Å:- Chain F: D.138, S.141, P.142, G.143, A.175
5 PLIP interactions:4 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:D.138, F:D.138, F:S.141, F:G.143, H2O.82
CA.44: 4 residues within 4Å:- Chain G: D.138, S.141, G.143, A.175
5 PLIP interactions:5 interactions with chain G- Metal complexes: G:D.138, G:D.138, G:S.141, G:S.141, G:G.143
CA.50: 5 residues within 4Å:- Chain H: D.138, S.141, P.142, G.143, A.175
5 PLIP interactions:4 interactions with chain H, 1 Ligand-Water interactions- Metal complexes: H:D.138, H:D.138, H:S.141, H:G.143, H2O.114
- 16 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 3 residues within 4Å:- Chain A: N.344, T.346, S.348
Ligand excluded by PLIPSO4.7: 4 residues within 4Å:- Chain A: R.51, C.73, Q.74
- Ligands: SLB.4
Ligand excluded by PLIPSO4.12: 3 residues within 4Å:- Chain B: N.344, T.346, S.348
Ligand excluded by PLIPSO4.13: 4 residues within 4Å:- Chain A: H.104, T.105
- Chain B: N.91, S.92
Ligand excluded by PLIPSO4.19: 3 residues within 4Å:- Chain C: N.344, T.346, S.348
Ligand excluded by PLIPSO4.20: 4 residues within 4Å:- Chain C: R.51, C.73, Q.74
- Ligands: SLB.17
Ligand excluded by PLIPSO4.25: 3 residues within 4Å:- Chain D: N.344, T.346, S.348
Ligand excluded by PLIPSO4.26: 4 residues within 4Å:- Chain C: H.104, T.105
- Chain D: N.91, S.92
Ligand excluded by PLIPSO4.32: 3 residues within 4Å:- Chain E: N.344, T.346, S.348
Ligand excluded by PLIPSO4.33: 4 residues within 4Å:- Chain E: R.51, C.73, Q.74
- Ligands: SLB.30
Ligand excluded by PLIPSO4.38: 3 residues within 4Å:- Chain F: N.344, T.346, S.348
Ligand excluded by PLIPSO4.39: 4 residues within 4Å:- Chain E: H.104, T.105
- Chain F: N.91, S.92
Ligand excluded by PLIPSO4.45: 3 residues within 4Å:- Chain G: N.344, T.346, S.348
Ligand excluded by PLIPSO4.46: 4 residues within 4Å:- Chain G: R.51, C.73, Q.74
- Ligands: SLB.43
Ligand excluded by PLIPSO4.51: 3 residues within 4Å:- Chain H: N.344, T.346, S.348
Ligand excluded by PLIPSO4.52: 4 residues within 4Å:- Chain G: H.104, T.105
- Chain H: N.91, S.92
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lawrence, M.C. et al., Structure of the Haemagglutinin-neuraminidase from Human Parainfluenza Virus Type III. J.Mol.Biol. (2004)
- Release Date
- 2004-02-03
- Peptides
- hemagglutinin-neuraminidase glycoprotein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x SLB: N-acetyl-beta-neuraminic acid(Non-covalent)
- 8 x CA: CALCIUM ION(Non-covalent)
- 16 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lawrence, M.C. et al., Structure of the Haemagglutinin-neuraminidase from Human Parainfluenza Virus Type III. J.Mol.Biol. (2004)
- Release Date
- 2004-02-03
- Peptides
- hemagglutinin-neuraminidase glycoprotein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B