SMTL ID : 1v3t.1

Crystal structure of leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 25 residues within 4Å: Chain A: P.52, M.128, T.132, G.156, A.157, V.158, A.177, G.178, K.182, Y.197, N.221, V.222, C.243, G.244, A.245, I.246, S.247, Y.249, F.274, I.275, V.276, M.320, L.321, G.323, N.325 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:T.132, A:V.276 Hydrogen bonds: A:A.157, A:V.158, A:G.178, A:K.182, A:Y.197, A:N.221, A:C.243, A:A.245, A:I.246, A:Y.249, A:V.276, A:N.325, A:N.325 Water bridges: A:D.51, A:D.51, A:Y.53, A:G.156, A:G.159, A:K.182, A:Y.197, A:K.198, A:I.246, A:S.247 Salt bridges: A:K.182 NAP.2: 27 residues within 4Å: Chain A: I.265 Chain B: P.52, M.128, T.132, A.153, G.156, A.157, V.158, A.177, G.178, K.182, Y.197, N.221, V.222, C.243, G.244, A.245, I.246, S.247, Y.249, F.274, I.275, V.276, M.320, L.321, G.323, N.325 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:T.132, B:V.276 Hydrogen bonds: B:A.157, B:V.158, B:G.178, B:K.182, B:Y.197, B:N.221, B:C.243, B:A.245, B:I.246, B:S.247, B:V.276, B:N.325, B:N.325 Water bridges: B:Y.53, B:G.156, B:G.159, B:Y.197, B:S.247, B:R.251, B:K.328 Salt bridges: B:K.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hori, T. et al., Structural basis of leukotriene B4 12-hydroxydehydrogenase/15-Oxo-prostaglandin 13-reductase catalytic mechanism and a possible Src homology 3 domain binding loop. J.Biol.Chem. (2004)

Release Date

2004-07-13

Peptides

leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase

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