SMTL ID : 1v4k.2 (1 other biounit)

Crystal Structure of Octaprenyl Pyrophosphate Synthase from Hyperthermophilic Thermotoga maritima S77F mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-octamer

Ligands

48 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.90, R.91, K.224 Ligands: SO4.6 Ligand excluded by PLIP SO4.2: 3 residues within 4Å: Chain A: G.60, E.61, D.62 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: R.150 Chain F: G.101, D.102 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: Q.147, R.150, D.218 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: R.88 Chain H: W.251 Ligand excluded by PLIP SO4.6: 6 residues within 4Å: Chain A: G.40, K.41, H.74, R.90, R.91 Ligands: SO4.1 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain B: R.90, R.91, K.224 Ligands: SO4.12 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain B: G.60, E.61, D.62 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain B: R.150 Chain E: G.101, D.102 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain B: Q.147, R.150, D.218 Ligand excluded by PLIP SO4.11: 2 residues within 4Å: Chain B: R.88 Chain G: W.251 Ligand excluded by PLIP SO4.12: 6 residues within 4Å: Chain B: G.40, K.41, H.74, R.90, R.91 Ligands: SO4.7 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain C: R.90, R.91, K.224 Ligands: SO4.18 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain C: G.60, E.61, D.62 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain C: R.150 Chain G: G.101, D.102 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain C: Q.147, R.150, D.218 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain C: R.88 Chain F: W.251 Ligand excluded by PLIP SO4.18: 6 residues within 4Å: Chain C: G.40, K.41, H.74, R.90, R.91 Ligands: SO4.13 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain D: R.90, R.91, K.224 Ligands: SO4.24 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain D: G.60, E.61, D.62 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain D: R.150 Chain H: G.101, D.102 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain D: Q.147, R.150, D.218 Ligand excluded by PLIP SO4.23: 2 residues within 4Å: Chain D: R.88 Chain E: W.251 Ligand excluded by PLIP SO4.24: 6 residues within 4Å: Chain D: G.40, K.41, H.74, R.90, R.91 Ligands: SO4.19 Ligand excluded by PLIP SO4.25: 4 residues within 4Å: Chain E: R.90, R.91, K.224 Ligands: SO4.30 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain E: G.60, E.61, D.62 Ligand excluded by PLIP SO4.27: 3 residues within 4Å: Chain B: G.101, D.102 Chain E: R.150 Ligand excluded by PLIP SO4.28: 3 residues within 4Å: Chain E: Q.147, R.150, D.218 Ligand excluded by PLIP SO4.29: 2 residues within 4Å: Chain D: W.251 Chain E: R.88 Ligand excluded by PLIP SO4.30: 6 residues within 4Å: Chain E: G.40, K.41, H.74, R.90, R.91 Ligands: SO4.25 Ligand excluded by PLIP SO4.31: 4 residues within 4Å: Chain F: R.90, R.91, K.224 Ligands: SO4.36 Ligand excluded by PLIP SO4.32: 3 residues within 4Å: Chain F: G.60, E.61, D.62 Ligand excluded by PLIP SO4.33: 3 residues within 4Å: Chain A: G.101, D.102 Chain F: R.150 Ligand excluded by PLIP SO4.34: 3 residues within 4Å: Chain F: Q.147, R.150, D.218 Ligand excluded by PLIP SO4.35: 2 residues within 4Å: Chain C: W.251 Chain F: R.88 Ligand excluded by PLIP SO4.36: 6 residues within 4Å: Chain F: G.40, K.41, H.74, R.90, R.91 Ligands: SO4.31 Ligand excluded by PLIP SO4.37: 4 residues within 4Å: Chain G: R.90, R.91, K.224 Ligands: SO4.42 Ligand excluded by PLIP SO4.38: 3 residues within 4Å: Chain G: G.60, E.61, D.62 Ligand excluded by PLIP SO4.39: 3 residues within 4Å: Chain C: G.101, D.102 Chain G: R.150 Ligand excluded by PLIP SO4.40: 3 residues within 4Å: Chain G: Q.147, R.150, D.218 Ligand excluded by PLIP SO4.41: 2 residues within 4Å: Chain B: W.251 Chain G: R.88 Ligand excluded by PLIP SO4.42: 6 residues within 4Å: Chain G: G.40, K.41, H.74, R.90, R.91 Ligands: SO4.37 Ligand excluded by PLIP SO4.43: 4 residues within 4Å: Chain H: R.90, R.91, K.224 Ligands: SO4.48 Ligand excluded by PLIP SO4.44: 3 residues within 4Å: Chain H: G.60, E.61, D.62 Ligand excluded by PLIP SO4.45: 3 residues within 4Å: Chain D: G.101, D.102 Chain H: R.150 Ligand excluded by PLIP SO4.46: 3 residues within 4Å: Chain H: Q.147, R.150, D.218 Ligand excluded by PLIP SO4.47: 2 residues within 4Å: Chain A: W.251 Chain H: R.88 Ligand excluded by PLIP SO4.48: 6 residues within 4Å: Chain H: G.40, K.41, H.74, R.90, R.91 Ligands: SO4.43 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, R.T. et al., Crystal Structure of Octaprenyl Pyrophosphate Synthase from Hyperthermophilic Thermotoga maritima and Mechanism of Product Chain Length Determination. J.Biol.Chem. (2004)

Release Date

2004-03-02

Peptides

octoprenyl-diphosphate synthase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

octoprenyl-diphosphate synthase

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