- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.96 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.2: 30 residues within 4Å:- Chain A: G.212, I.213, G.214, T.236, G.237, K.238, T.254, Y.255, R.256, V.257, G.276, S.277, N.278, F.279, P.280, F.281, D.298, I.299, D.300, M.303, G.316, D.317, A.318, V.386, S.408, P.409, A.412, F.471
- Chain B: F.113
- Ligands: HTL.3
27 PLIP interactions:25 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:V.257, A:V.386, A:A.412, A:F.471, B:F.113, B:F.113
- Hydrogen bonds: A:I.213, A:G.214, A:T.236, A:T.236, A:G.237, A:T.254, A:V.257, A:S.277, A:N.278, A:I.299, A:D.317, A:A.318, A:P.409
- Water bridges: A:N.278, A:N.278, A:N.278, A:N.278, A:D.300, A:D.300
- Salt bridges: A:K.238, A:K.238
FAD.5: 30 residues within 4Å:- Chain A: F.113
- Chain B: G.212, I.213, G.214, T.236, G.237, K.238, T.254, Y.255, R.256, V.257, G.276, S.277, N.278, F.279, P.280, F.281, D.298, I.299, D.300, M.303, G.316, D.317, A.318, V.386, S.408, P.409, A.412, F.471
- Ligands: HTL.6
27 PLIP interactions:25 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:V.257, B:V.386, B:A.412, B:F.471, A:F.113, A:F.113
- Hydrogen bonds: B:I.213, B:G.214, B:T.236, B:T.236, B:G.237, B:T.254, B:V.257, B:S.277, B:N.278, B:I.299, B:D.317, B:A.318, B:P.409
- Water bridges: B:N.278, B:N.278, B:N.278, B:N.278, B:D.300, B:D.300
- Salt bridges: B:K.238, B:K.238
FAD.8: 30 residues within 4Å:- Chain C: G.212, I.213, G.214, T.236, G.237, K.238, T.254, Y.255, R.256, V.257, G.276, S.277, N.278, F.279, P.280, F.281, D.298, I.299, D.300, M.303, G.316, D.317, A.318, V.386, S.408, P.409, A.412, F.471
- Chain D: F.113
- Ligands: HTL.9
27 PLIP interactions:25 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:V.257, C:V.386, C:A.412, C:F.471, D:F.113, D:F.113
- Hydrogen bonds: C:I.213, C:G.214, C:T.236, C:G.237, C:T.254, C:V.257, C:S.277, C:N.278, C:I.299, C:D.317, C:D.317, C:A.318, C:P.409
- Water bridges: C:Y.210, C:N.278, C:N.278, C:N.278, C:N.278, C:D.300
- Salt bridges: C:K.238, C:K.238
FAD.11: 30 residues within 4Å:- Chain C: F.113
- Chain D: G.212, I.213, G.214, T.236, G.237, K.238, T.254, Y.255, R.256, V.257, G.276, S.277, N.278, F.279, P.280, F.281, D.298, I.299, D.300, M.303, G.316, D.317, A.318, V.386, S.408, P.409, A.412, F.471
- Ligands: HTL.12
27 PLIP interactions:25 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:V.257, D:V.386, D:A.412, D:F.471, C:F.113, C:F.113
- Hydrogen bonds: D:I.213, D:G.214, D:T.236, D:G.237, D:T.254, D:V.257, D:S.277, D:N.278, D:I.299, D:D.317, D:D.317, D:A.318, D:P.409
- Water bridges: D:Y.210, D:N.278, D:N.278, D:N.278, D:N.278, D:D.300
- Salt bridges: D:K.238, D:K.238
- 4 x HTL: 2-ACETYL-THIAMINE DIPHOSPHATE(Non-covalent)
HTL.3: 26 residues within 4Å:- Chain A: V.386, G.387, N.388, S.389, A.412, M.414, G.438, D.439, G.440, A.441, M.444, N.466, E.468, Y.469, A.470, F.471, I.472
- Chain B: P.25, E.51, S.74, P.77, G.78, H.81, Q.114
- Ligands: MG.1, FAD.2
23 PLIP interactions:3 interactions with chain B, 20 interactions with chain A- Hydrophobic interactions: B:P.77, A:V.386, A:Y.469, A:F.471, A:F.471, A:I.472
- Hydrogen bonds: B:S.74, B:Q.114, A:V.386, A:N.388, A:S.389, A:A.412, A:M.414, A:G.440, A:A.441, A:N.466, A:E.468, A:A.470, A:F.471
- Water bridges: A:G.438, A:G.438, A:D.439, A:D.439
HTL.6: 26 residues within 4Å:- Chain A: P.25, E.51, S.74, P.77, G.78, H.81, Q.114
- Chain B: V.386, G.387, N.388, S.389, A.412, M.414, G.438, D.439, G.440, A.441, M.444, N.466, E.468, Y.469, A.470, F.471, I.472
- Ligands: MG.4, FAD.5
23 PLIP interactions:20 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:V.386, B:Y.469, B:F.471, B:F.471, B:I.472, A:P.77
- Hydrogen bonds: B:V.386, B:N.388, B:S.389, B:A.412, B:M.414, B:G.440, B:A.441, B:N.466, B:E.468, B:A.470, B:F.471, A:S.74, A:Q.114
- Water bridges: B:G.438, B:G.438, B:D.439, B:D.439
HTL.9: 26 residues within 4Å:- Chain C: V.386, G.387, N.388, S.389, A.412, M.414, G.438, D.439, G.440, A.441, M.444, N.466, E.468, Y.469, A.470, F.471, I.472
- Chain D: P.25, E.51, S.74, P.77, G.78, H.81, Q.114
- Ligands: MG.7, FAD.8
23 PLIP interactions:20 interactions with chain C, 3 interactions with chain D- Hydrophobic interactions: C:V.386, C:Y.469, C:F.471, C:F.471, C:I.472, D:P.77
- Hydrogen bonds: C:V.386, C:N.388, C:S.389, C:A.412, C:M.414, C:G.440, C:A.441, C:N.466, C:E.468, C:A.470, C:F.471, D:S.74, D:Q.114
- Water bridges: C:G.438, C:G.438, C:D.439, C:D.439
HTL.12: 26 residues within 4Å:- Chain C: P.25, E.51, S.74, P.77, G.78, H.81, Q.114
- Chain D: V.386, G.387, N.388, S.389, A.412, M.414, G.438, D.439, G.440, A.441, M.444, N.466, E.468, Y.469, A.470, F.471, I.472
- Ligands: MG.10, FAD.11
23 PLIP interactions:20 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: D:V.386, D:Y.469, D:F.471, D:F.471, D:I.472, C:P.77
- Hydrogen bonds: D:V.386, D:N.388, D:S.389, D:A.412, D:M.414, D:G.440, D:A.441, D:N.466, D:E.468, D:A.470, D:F.471, C:S.74, C:Q.114
- Water bridges: D:G.438, D:G.438, D:D.439, D:D.439
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Juan, E.C. et al., The structures of pyruvate oxidase from Aerococcus viridans with cofactors and with a reaction intermediate reveal the flexibility of the active-site tunnel for catalysis. Acta Crystallogr.,Sect.F (2007)
- Release Date
- 2005-06-28
- Peptides
- Pyruvate oxidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.96 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x HTL: 2-ACETYL-THIAMINE DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Juan, E.C. et al., The structures of pyruvate oxidase from Aerococcus viridans with cofactors and with a reaction intermediate reveal the flexibility of the active-site tunnel for catalysis. Acta Crystallogr.,Sect.F (2007)
- Release Date
- 2005-06-28
- Peptides
- Pyruvate oxidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A