SMTL ID : 1v5z.1

Binding of coumarins to NAD(P)H:FMN oxidoreductase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 21 residues within 4Å: Chain A: R.11, Y.12, T.13, K.15, F.71, N.72, Y.143, T.162, M.163, E.164, G.165, K.205, R.207 Chain B: A.39, S.40, S.41, I.42, N.43, Q.141, L.144 Ligands: 2HC.4 22 PLIP interactions: 19 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:Y.143, A:T.162, A:E.164, B:L.144 Hydrogen bonds: A:T.13, A:T.13, A:T.13, A:T.13, A:K.15, A:N.72, A:N.72, A:E.164, A:G.165, A:N.200, B:S.40, B:I.42 Water bridges: A:K.205, A:K.205, A:R.207 Salt bridges: A:R.11, A:K.205, A:R.207 FMN.3: 22 residues within 4Å: Chain A: A.39, S.40, S.41, I.42, N.43, Q.141, L.144 Chain B: R.11, Y.12, T.13, K.15, F.71, N.72, Y.143, T.161, T.162, M.163, E.164, G.165, K.205, R.207 Ligands: 2HC.2 22 PLIP interactions: 19 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:Y.143, B:T.162, B:E.164, A:L.144 Hydrogen bonds: B:T.13, B:T.13, B:T.13, B:T.13, B:K.15, B:N.72, B:N.72, B:E.164, B:G.165, A:S.40, A:I.42 Water bridges: B:N.200, B:K.205, B:K.205, B:R.207 Salt bridges: B:R.11, B:K.205, B:R.207

2 x 2HC: (2E)-3-(2-HYDROXYPHENYL)ACRYLIC ACID(Non-covalent)

2HC.2: 8 residues within 4Å: Chain A: S.41, I.42, F.123 Chain B: H.69, F.71, E.164, G.165 Ligands: FMN.3 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:I.42, A:F.123, A:F.123, B:F.71, B:E.164 Hydrogen bonds: A:S.41, A:I.42, B:E.164 Salt bridges: B:K.15 pi-Stacking: B:H.69 2HC.4: 9 residues within 4Å: Chain A: K.15, H.69, F.71, E.164, G.165 Chain B: S.41, I.42, F.123 Ligands: FMN.1 10 PLIP interactions: 5 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:I.42, B:F.123, B:F.123, A:F.71, A:E.164 Hydrogen bonds: B:S.41, B:I.42, A:E.164 Salt bridges: A:K.15 pi-Stacking: A:H.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kobori, T. et al., Binding of coumarins to NAD(P)H:FMN oxidoreductase. To be Published

Release Date

2005-03-08

Peptides

Major NAD(P)H-flavin oxidoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Major NAD(P)H-flavin oxidoreductase

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