SMTL ID : 1v6a.1

Crystal Structure of L-lactate dehydrogenase from Cyprinus carpio

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

8 x GLC- GLC: alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 7 residues within 4Å: Chain A: K.22, E.47, K.76, V.78, S.84, V.85, A.87 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.76 Salt bridges: A:K.76 GLC-GLC.2: 11 residues within 4Å: Chain A: G.27, V.28, G.29, D.52, M.54, T.95, A.96, G.97, A.98, R.99, I.116 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.99 GLC-GLC.3: 7 residues within 4Å: Chain B: K.22, E.47, K.76, V.78, S.84, V.85, A.87 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.76 Salt bridges: B:K.76 GLC-GLC.4: 7 residues within 4Å: Chain B: G.29, D.52, V.53, K.57, A.96, G.97, R.99 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.97 Water bridges: B:N.138 GLC-GLC.5: 7 residues within 4Å: Chain C: K.22, E.47, K.76, V.78, S.84, V.85, A.87 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.76 Salt bridges: C:K.76 GLC-GLC.6: 11 residues within 4Å: Chain C: G.27, V.28, G.29, D.52, M.54, T.95, A.96, G.97, A.98, R.99, I.116 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.99 GLC-GLC.7: 7 residues within 4Å: Chain D: K.22, E.47, K.76, V.78, S.84, V.85, A.87 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:K.76 Salt bridges: D:K.76 GLC-GLC.8: 7 residues within 4Å: Chain D: G.29, D.52, V.53, K.57, A.96, G.97, R.99 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.97 Water bridges: D:N.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watanabe, K. et al., Crystal Structure of L-lactate dehydrogenase from Cyprinus carpio. To be Published

Release Date

2005-02-15

Peptides

L-lactate dehydrogenase A chain: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

L-lactate dehydrogenase A chain