SMTL ID : 1v71.1

Crystal Structure of S.pombe Serine Racemase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: E.208, G.212, D.214 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.208, A:G.212, A:D.214, H2O.1, H2O.2, H2O.3 MG.3: 3 residues within 4Å: Chain B: E.208, G.212, D.214 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.208, B:G.212, B:D.214, H2O.11, H2O.12, H2O.13

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.2: 15 residues within 4Å: Chain A: F.56, K.57, N.84, Y.152, L.182, G.183, G.184, G.185, G.186, L.187, G.236, E.281, T.283, S.308, G.309 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:K.57 Hydrogen bonds: A:N.84, A:G.183, A:G.184, A:G.185, A:G.186, A:L.187, A:S.308 Water bridges: A:K.57, A:N.84, A:P.151, A:L.188 Salt bridges: A:K.57 pi-Stacking: A:F.56 PLP.4: 15 residues within 4Å: Chain B: F.56, K.57, N.84, Y.152, L.182, G.183, G.184, G.185, G.186, L.187, G.236, E.281, T.283, S.308, G.309 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:K.57 Hydrogen bonds: B:N.84, B:G.183, B:G.184, B:G.185, B:G.186, B:L.187, B:S.308 Water bridges: B:K.57, B:N.84, B:P.151, B:L.188 Salt bridges: B:K.57 pi-Stacking: B:F.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goto, M., Crystal Structure of S.pombe Serine Racemase. to be published

Release Date

2005-06-14

Peptides

Hypothetical protein C320.14 in chromosome III: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Hypothetical protein C320.14 in chromosome III

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