SMTL ID : 1v72.1

Crystal Structure of Phenylserine Aldolase from Pseudomonas Putida

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: E.163, D.167 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.163, A:E.163, A:D.167, A:D.167, H2O.8 ZN.3: 2 residues within 4Å: Chain B: E.163, D.167 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.163, B:E.163, B:D.167, B:D.167, H2O.16 ZN.5: 2 residues within 4Å: Chain C: E.163, D.167 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.163, C:E.163, C:D.167, C:D.167, H2O.24 ZN.7: 2 residues within 4Å: Chain D: E.163, D.167 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.163, D:E.163, D:D.167, D:D.167, H2O.32

4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.2: 13 residues within 4Å: Chain A: T.67, G.68, T.69, N.72, H.93, T.148, E.152, D.179, S.181, R.182, K.212 Chain C: Y.39, S.244 23 PLIP interactions: 16 interactions with chain A, 7 interactions with chain C Hydrophobic interactions: A:H.93, A:T.148, A:E.152, A:K.212 Hydrogen bonds: A:G.68, A:T.69, A:T.69, A:N.72, A:S.181, C:Y.39 Water bridges: A:T.69, A:T.69, A:R.182, A:R.182, A:R.182, C:K.237, C:K.237, C:S.244, C:S.244, C:S.244 Salt bridges: A:H.93, C:K.237 pi-Stacking: A:H.93 PLP.4: 13 residues within 4Å: Chain B: T.67, G.68, T.69, N.72, H.93, T.148, E.152, D.179, S.181, R.182, K.212 Chain D: Y.39, S.244 23 PLIP interactions: 7 interactions with chain D, 16 interactions with chain B Hydrogen bonds: D:Y.39, B:G.68, B:T.69, B:T.69, B:N.72, B:S.181 Water bridges: D:K.237, D:K.237, D:S.244, D:S.244, D:S.244, B:T.69, B:T.69, B:R.182, B:R.182, B:R.182 Salt bridges: D:K.237, B:H.93 Hydrophobic interactions: B:H.93, B:T.148, B:E.152, B:K.212 pi-Stacking: B:H.93 PLP.6: 13 residues within 4Å: Chain A: Y.39, S.244 Chain C: T.67, G.68, T.69, N.72, H.93, T.148, E.152, D.179, S.181, R.182, K.212 22 PLIP interactions: 16 interactions with chain C, 6 interactions with chain A Hydrophobic interactions: C:H.93, C:T.148, C:E.152, C:K.212 Hydrogen bonds: C:G.68, C:T.69, C:T.69, C:T.69, C:N.72, C:S.181, C:K.212 Water bridges: C:R.182, C:R.182, C:R.182, A:K.237, A:K.237, A:S.244, A:S.244, A:S.244 Salt bridges: C:H.93, A:K.237 pi-Stacking: C:H.93 PLP.8: 13 residues within 4Å: Chain B: Y.39, S.244 Chain D: T.67, G.68, T.69, N.72, H.93, T.148, E.152, D.179, S.181, R.182, K.212 22 PLIP interactions: 16 interactions with chain D, 6 interactions with chain B Hydrophobic interactions: D:H.93, D:T.148, D:E.152, D:K.212 Hydrogen bonds: D:G.68, D:T.69, D:T.69, D:T.69, D:N.72, D:S.181, D:K.212 Water bridges: D:R.182, D:R.182, D:R.182, B:K.237, B:K.237, B:S.244, B:S.244, B:S.244 Salt bridges: D:H.93, B:K.237 pi-Stacking: D:H.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Omi, R. et al., Crystal Structure of Phenylserine Aldolase from Pseudomonas Putida. To be Published

Release Date

2005-03-01

Peptides

Aldolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Aldolase