SMTL ID : 1v7p.1

Structure of EMS16-alpha2-I domain complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: R.30, E.34 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.34 Water bridges: A:T.33 Salt bridges: A:R.30

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: W.25, R.73, R.75 Chain B: S.79 Ligand excluded by PLIP

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain B: N.21, E.24, E.113 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:E.113 Hydrogen bonds: B:N.21, B:T.23, B:T.23

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.4: 4 residues within 4Å: Chain C: D.14, S.16, S.18, D.117 6 PLIP interactions: 3 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:S.16, C:S.18, C:D.117, H2O.11, H2O.11, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Horii, K. et al., Crystal structure of EMS16 in complex with the integrin alpha2-I domain. J.Mol.Biol. (2004)

Release Date

2004-09-07

Peptides

EMS16 A chain: A
EMS16 B chain: B
Integrin alpha-2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

EMS16 A chain

EMS16 B chain

Integrin alpha-2

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