SMTL ID : 1v8k.2 (1 other biounit)

The Crystal Structure of the Minimal Functional Domain of the Microtubule Destabilizer KIF2C Complexed with Mg-AMPPNP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.169 Ligands: ANP.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.169, H2O.3, H2O.3, H2O.3 MG.3: 2 residues within 4Å: Chain B: T.169 Ligands: ANP.4 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.169, H2O.7, H2O.7, H2O.8 MG.5: 2 residues within 4Å: Chain C: T.169 Ligands: ANP.6 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:T.169, H2O.12, H2O.12, H2O.12 MG.7: 2 residues within 4Å: Chain D: T.169 Ligands: ANP.8 4 PLIP interactions: 1 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:T.169, H2O.16, H2O.16, H2O.16

4 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 16 residues within 4Å: Chain A: R.78, R.80, P.81, Q.163, T.164, G.165, S.166, G.167, K.168, T.169, H.170, L.176, S.281, S.282, G.309 Ligands: MG.1 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:R.78, A:G.165, A:S.166, A:S.166, A:G.167, A:G.167, A:K.168, A:K.168, A:T.169, A:H.170, A:S.281, A:S.282, A:G.309 Water bridges: A:R.78, A:R.78, A:R.78, A:N.83, A:T.171, A:S.281 pi-Stacking: A:H.170, A:H.170 ANP.4: 16 residues within 4Å: Chain B: R.78, R.80, P.81, Q.163, T.164, G.165, S.166, G.167, K.168, T.169, H.170, L.176, S.281, S.282, G.309 Ligands: MG.3 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:R.78, B:G.165, B:S.166, B:S.166, B:G.167, B:G.167, B:K.168, B:K.168, B:T.169, B:H.170, B:S.281, B:S.282, B:G.309 Water bridges: B:R.78, B:R.78, B:R.78, B:N.83, B:T.171, B:S.281 pi-Stacking: B:H.170, B:H.170 ANP.6: 16 residues within 4Å: Chain C: R.78, R.80, P.81, Q.163, T.164, G.165, S.166, G.167, K.168, T.169, H.170, L.176, S.281, S.282, G.309 Ligands: MG.5 20 PLIP interactions: 20 interactions with chain C Hydrogen bonds: C:R.78, C:G.165, C:S.166, C:S.166, C:G.167, C:G.167, C:K.168, C:K.168, C:T.169, C:H.170, C:S.281, C:S.282, C:G.309 Water bridges: C:R.78, C:R.78, C:R.78, C:N.83, C:S.281 pi-Stacking: C:H.170, C:H.170 ANP.8: 16 residues within 4Å: Chain D: R.78, R.80, P.81, Q.163, T.164, G.165, S.166, G.167, K.168, T.169, H.170, L.176, S.281, S.282, G.309 Ligands: MG.7 20 PLIP interactions: 20 interactions with chain D Hydrogen bonds: D:R.78, D:G.165, D:S.166, D:S.166, D:G.167, D:G.167, D:K.168, D:K.168, D:T.169, D:H.170, D:S.281, D:S.282, D:G.309 Water bridges: D:R.78, D:R.78, D:R.78, D:N.83, D:S.281 pi-Stacking: D:H.170, D:H.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ogawa, T. et al., A common mechanism for microtubule destabilizers-M type kinesins stabilize curling of the protofilament using the class-specific neck and loops. Cell(Cambridge,Mass.) (2004)

Release Date

2004-03-02

Peptides

Kinesin-like protein KIF2C: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Kinesin-like protein KIF2C

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