SMTL ID : 1v8u.1

Crystal structure analysis of the ADP-ribose pyrophosphatase of E82Q mutant with SO4 and Mg

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: R.81, Q.82 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain B: R.81, Q.82 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.54, A.66, G.67, L.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.68 Water bridges: A:R.54, A:A.66 Salt bridges: A:R.54 SO4.4: 4 residues within 4Å: Chain B: R.54, A.66, G.67, L.68 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.68 Water bridges: B:R.54, B:A.66, B:E.86 Salt bridges: B:R.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshiba, S. et al., Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal. J.Biol.Chem. (2004)

Release Date

2004-10-19

Peptides

ADP-ribose pyrophosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ADP-ribose pyrophosphatase

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