SMTL ID : 1v9h.1

Crystal structure of the RNase MC1 mutant Y101A in complex with 5'-UMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.139, G.192, A.193 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.193 Salt bridges: A:R.139 SO4.2: 7 residues within 4Å: Chain A: G.42, L.43, W.76, E.91, W.92, G.96, F.109 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.43, A:L.43, A:E.91, A:G.96 SO4.3: 3 residues within 4Å: Chain A: N.54, H.90, K.94 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.54 Salt bridges: A:H.90, A:K.94

1 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)

U5P.4: 12 residues within 4Å: Chain A: Q.16, H.41, W.44, N.78, V.79, L.80, R.81, F.87, H.90, E.91, K.94, H.95 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:Q.16, A:W.44, A:N.78, A:N.78, A:V.79, A:L.80, A:R.81 Water bridges: A:K.94, A:K.94, A:K.94 Salt bridges: A:H.41, A:H.90, A:K.94, A:H.95 pi-Stacking: A:F.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kimura, K. et al., Amino acids conserved at the C-terminal half of the ribonuclease t2 family contribute to protein stability of the enzymes. Biosci.Biotechnol.Biochem. (2004)

Release Date

2004-10-05

Peptides

Ribonuclease MC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribonuclease MC