SMTL ID : 1v9l.1

L-glutamate dehydrogenase from Pyrobaculum islandicum complexed with NAD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-hexamer

Ligands

6 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 17 residues within 4Å: Chain A: K.93, T.189, Q.216, G.217, M.218, G.219, N.220, V.221, D.241, I.242, G.265, A.299, I.300, G.320, A.321, N.322, N.347 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.216, A:M.218, A:N.220, A:N.220, A:V.221, A:I.242, A:A.299, A:N.322, A:N.322 Water bridges: A:G.222 NAD.2: 16 residues within 4Å: Chain B: T.189, Q.216, G.217, G.219, N.220, V.221, D.241, I.242, G.265, P.284, A.298, A.299, G.320, A.321, N.322, N.347 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:T.189, B:T.189, B:Q.216, B:N.220, B:V.221, B:D.241, B:I.242, B:N.322 Water bridges: B:G.222 NAD.3: 17 residues within 4Å: Chain C: T.189, Q.216, G.217, G.219, N.220, V.221, S.240, D.241, I.242, G.265, A.298, A.299, I.300, G.320, A.321, N.322, N.347 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:N.220, C:N.220, C:V.221, C:N.322, C:N.322 NAD.4: 18 residues within 4Å: Chain D: T.189, Q.216, G.217, M.218, G.219, N.220, V.221, D.241, I.242, G.265, P.284, A.298, A.299, I.300, G.320, A.321, N.322, N.347 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:Q.216, D:M.218, D:N.220, D:N.220, D:V.221, D:D.241, D:I.242, D:N.322, D:N.322 NAD.5: 17 residues within 4Å: Chain E: T.189, Q.216, G.217, G.219, N.220, V.221, S.240, D.241, I.242, P.284, A.298, A.299, I.300, G.320, A.321, N.322, N.347 11 PLIP interactions: 11 interactions with chain E Hydrophobic interactions: E:V.221 Hydrogen bonds: E:T.189, E:Q.216, E:N.220, E:N.220, E:V.221, E:A.299, E:N.322, E:N.322 Water bridges: E:G.219, E:G.222 NAD.6: 14 residues within 4Å: Chain F: T.189, Q.216, G.217, G.219, N.220, V.221, D.241, I.242, A.298, A.299, I.300, G.320, A.321, N.322 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:Q.216, F:N.220, F:N.220, F:V.221, F:A.299, F:N.322, F:N.322

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bhuiya, M.W. et al., The First Crystal Structure of Hyperthermostable NAD-dependent Glutamate Dehydrogenase from Pyrobaculum islandicum. J.Mol.Biol. (2005)

Release Date

2004-12-14

Peptides

glutamate dehydrogenase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

glutamate dehydrogenase