SMTL ID : 1va0.1

Crystal Structure of the Native Form of Uroporphyrin III C-methyl transferase from Thermus thermophilus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-dimer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: G.84, D.85, V.88, T.113, S.114 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain B: G.84, D.85, V.88, T.113, S.114 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain B: G.206 Ligand excluded by PLIP

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: R.151, R.176, D.177, E.180 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.177, A:E.180 EDO.3: 5 residues within 4Å: Chain A: Y.4, R.22, L.23, E.26, F.77 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.22 Water bridges: A:Y.4, A:Y.4 EDO.6: 4 residues within 4Å: Chain B: A.150, R.151, V.152, R.176 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.150, B:R.151 EDO.7: 5 residues within 4Å: Chain B: R.194, V.196, K.207, V.208, E.209 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.194, B:R.194, B:E.209 EDO.8: 3 residues within 4Å: Chain A: R.101 Chain B: E.227, A.234 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:A.226, A:R.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rehse, P.H. et al., Structure of a closed-form uroporphyrinogen-III C-methyltransferase from Thermus thermophilus. Acta Crystallogr.,Sect.D (2005)

Release Date

2005-02-15

Peptides

Uroporphyrin-III C-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uroporphyrin-III C-methyltransferase

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