SMTL ID : 1vb4.4 (5 other biounits)

T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)36

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-hexamer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: Y.171, N.231, N.232 Chain D: D.110, D.113 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain D Metal complexes: A:Y.171, A:N.232, D:D.110, D:D.113 CA.2: 3 residues within 4Å: Chain B: Y.171, N.231, N.232 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:Y.171, B:N.232 CA.3: 3 residues within 4Å: Chain C: Y.171, N.231, N.232 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:Y.171, C:N.232 CA.4: 5 residues within 4Å: Chain D: Y.171, N.231, N.232 Chain E: D.110, D.113 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain D Metal complexes: E:D.110, E:D.113, D:Y.171, D:N.232 CA.5: 5 residues within 4Å: Chain A: D.110, D.113 Chain E: Y.171, N.231, N.232 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain A Metal complexes: E:Y.171, E:N.232, A:D.110, A:D.113 CA.6: 3 residues within 4Å: Chain F: Y.171, N.231, N.232 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:Y.171, F:N.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sangita, V. et al., T=1 capsid structures of Sesbania mosaic virus coat protein mutants: determinants of T=3 and T=1 capsid assembly. J.Mol.Biol. (2004)

Release Date

2004-11-23

Peptides

coat protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

coat protein

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